RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RPS18P62269 152 aaKnown RBP19.04■□□□□ 0.64
CLN3-262ENST00000637699 CHAF1BQ13112 559 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 TUBB3Q13509 450 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 NFKBIBQ15653 356 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 PCSK7Q16549 785 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 ANO6Q4KMQ2 910 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 PDPK2PQ6A1A2 396 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 CYB5D1Q6P9G0 228 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 MAP7D3Q8IWC1 876 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 RBM12BQ8IXT5 1001 aaKnown RBP19.04■□□□□ 0.64
CLN3-262ENST00000637699 SIDT2Q8NBJ9 832 aaKnown RBP19.04■□□□□ 0.64
CLN3-262ENST00000637699 GALNT11Q8NCW6 608 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 TRIB3Q96RU7 358 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 MAGEE1Q9HCI5 957 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 EPHA6Q9UF33 1036 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 WDR37Q9Y2I8 494 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 A0A087X0T9 212 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 A0A1B0GTH6 734 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 FAM228BP0C875 321 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 BPIP17213 487 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 PGDP52209 483 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 TAS2R40P59535 323 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 NADK2Q4G0N4 442 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 ZFYVE27Q5T4F4 411 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 AGAP9Q5VTM2 703 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 CPZQ66K79 652 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 WASH2PQ6VEQ5 465 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 TRAPPC5Q8IUR0 188 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 FAF2Q96CS3 445 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 ZNF830Q96NB3 372 aaPredicted RBP19.03■□□□□ 0.64
CLN3-262ENST00000637699 RAB33BQ9H082 229 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 WASH6PQ9NQA3 447 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 NFKBIL1Q9UBC1 381 aaPredicted RBP19.03■□□□□ 0.64
CLN3-262ENST00000637699 TMPRSS11EQ9UL52 423 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 BZW2Q9Y6E2 419 aaKnown RBP19.03■□□□□ 0.64
CLN3-262ENST00000637699 MYO9AB2RTY4 2548 aa19.03■□□□□ 0.64
CLN3-262ENST00000637699 SMTNL1A8MU46 457 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 VCLP18206 1134 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 CCL11P51671 97 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 IFI35P80217 286 aaPredicted RBP19.02■□□□□ 0.64
CLN3-262ENST00000637699 PPIDQ08752 370 aaKnown RBP19.02■□□□□ 0.64
CLN3-262ENST00000637699 UGT8Q16880 541 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 CAVIN1Q6NZI2 390 aaKnown RBP19.02■□□□□ 0.64
CLN3-262ENST00000637699 CERS6Q6ZMG9 384 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 GDAP1Q8TB36 358 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 THAP4Q8WY91 577 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 UBXN4Q92575 508 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 SLC41A2Q96JW4 573 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 AGAP3Q96P47 875 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 SLC25A23Q9BV35 468 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 BPIFA1Q9NP55 256 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 HEY1Q9Y5J3 304 aa19.02■□□□□ 0.64
CLN3-262ENST00000637699 ARGFXA6NJG6 315 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 AURKAO14965 403 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 PROSCO94903 275 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 SERPING1P05155 500 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 EBLN1P0CF75 366 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 FECHP22830 423 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 PTPN4P29074 926 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 HALP42357 657 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 ARL4DP49703 201 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 RPS15P62841 145 aaKnown RBP19.01■□□□□ 0.63
CLN3-262ENST00000637699 AP1B1Q10567 949 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 TMEM115Q12893 351 aaPredicted RBP19.01■□□□□ 0.63
CLN3-262ENST00000637699 NR1I3Q14994 352 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 ATP13A5Q4VNC0 1218 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 ALKBH5Q6P6C2 394 aaKnown RBP19.01■□□□□ 0.63
CLN3-262ENST00000637699 C11orf96Q7Z7L8 435 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 NT5DC3Q86UY8 548 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 GPR150Q8NGU9 434 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 SSC4DQ8WTU2 575 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 SEC14L1Q92503 715 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 RAPGEF5Q92565 580 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 IMP4Q96G21 291 aaKnown RBP19.01■□□□□ 0.63
CLN3-262ENST00000637699 FCRL4Q96PJ5 515 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 MAP3K3Q99759 626 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 GPR87Q9BY21 358 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 FGF21Q9NSA1 209 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 PSMD13Q9UNM6 376 aa19.01■□□□□ 0.63
CLN3-262ENST00000637699 SEMA7AO75326 666 aa19■□□□□ 0.63
CLN3-262ENST00000637699 ACY1Q03154 408 aa19■□□□□ 0.63
CLN3-262ENST00000637699 CDK18Q07002 472 aa19■□□□□ 0.63
CLN3-262ENST00000637699 IL10RAQ13651 578 aa19■□□□□ 0.63
CLN3-262ENST00000637699 GTF2H3Q13889 308 aa19■□□□□ 0.63
CLN3-262ENST00000637699 FIGNQ5HY92 759 aa19■□□□□ 0.63
CLN3-262ENST00000637699 SYVN1Q86TM6 617 aa19■□□□□ 0.63
CLN3-262ENST00000637699 TTC30BQ8N4P2 665 aa19■□□□□ 0.63
CLN3-262ENST00000637699 SPATA22Q8NHS9 363 aa19■□□□□ 0.63
CLN3-262ENST00000637699 TTC25Q96NG3 672 aa19■□□□□ 0.63
CLN3-262ENST00000637699 RNF157Q96PX1 679 aa19■□□□□ 0.63
CLN3-262ENST00000637699 VPS35Q96QK1 796 aa19■□□□□ 0.63
CLN3-262ENST00000637699 BPIFA3Q9BQP9 254 aa19■□□□□ 0.63
CLN3-262ENST00000637699 ING2Q9H160 280 aa19■□□□□ 0.63
CLN3-262ENST00000637699 ACSS2Q9NR19 701 aa19■□□□□ 0.63
CLN3-262ENST00000637699 SEMA5BQ9P283 1151 aa19■□□□□ 0.63
CLN3-262ENST00000637699 CTTNBP2NLQ9P2B4 639 aa19■□□□□ 0.63
CLN3-262ENST00000637699 MAP4K5Q9Y4K4 846 aa19■□□□□ 0.63
CLN3-262ENST00000637699 SPO11Q9Y5K1 396 aa19■□□□□ 0.63
CLN3-262ENST00000637699 ESPL1Q14674 2120 aa19■□□□□ 0.63
CLN3-262ENST00000637699 MED13Q9UHV7 2174 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms