RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 TMEM19Q96HH6 336 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 METTL2AQ96IZ6 378 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 NEUROD6Q96NK8 337 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 SMC6Q96SB8 1091 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 MTERF1Q99551 399 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 NAP1L4Q99733 375 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 NCAPGQ9BPX3 1015 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 LBHD1Q9BQE6 289 aaPredicted RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 TMEM47Q9BQJ4 181 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PYGO2Q9BRQ0 406 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PCGF1Q9BSM1 259 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 FUZQ9BT04 418 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 MOV10L1Q9BXT6 1211 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 IFIH1Q9BYX4 1025 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 FTOQ9C0B1 505 aaKnown RBP eCLIP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 USP44Q9H0E7 712 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 GAREM1Q9H706 876 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PPP1R3EQ9H7J1 279 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 ZNF696Q9H7X3 374 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PRKRIP1Q9H875 184 aaPredicted RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 JMJD4Q9H9V9 463 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 UPF2Q9HAU5 1272 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 NOX4Q9NPH5 578 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 WASH6PQ9NQA3 447 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 KRT84Q9NSB2 600 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PPP1R14DQ9NXH3 145 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 SAGE1Q9NXZ1 904 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 TAS2R10Q9NYW0 307 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 SMARCAL1Q9NZC9 954 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 DLGAP2Q9P1A6 1054 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 SLCO3A1Q9UIG8 710 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 SARDHQ9UL12 918 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 AGO1Q9UL18 857 aaKnown RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 MKLN1Q9UL63 735 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PADI1Q9ULC6 663 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 FAF1Q9UNN5 650 aaPredicted RBP1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 NAALADL1Q9UQQ1 740 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 KLHL20Q9Y2M5 609 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 ADAM18Q9Y3Q7 739 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 NFE2L3Q9Y4A8 694 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 LOXL2Q9Y4K0 774 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 CYP46A1Q9Y6A2 500 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 LOC285556D6RIA3 1793 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 CD163L1Q9NR16 1453 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 LAMA4Q16363 1823 aa1.1□□□□□ -2.23
SMARCB1-209ENST00000635578 PDCD11Q14690 1871 aaKnown RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 NUP155O75694 1391 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 KIAA0232Q92628 1395 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 OVOS2A0A0G2JMS6 1433 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 OVOS2A0A0J9YW53 1432 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 OVOS2Q6IE36 1432 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 PPIP5K1Q6PFW1 1433 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ATP10DQ9P241 1426 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 NCOA3Q9Y6Q9 1424 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 A0A0U1RQF3 1178 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 A0A0U1RQJ8 604 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 FAM237BA0A1B0GVD1 139 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 C1orf226A1L170 272 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CBY3A6NI87 242 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 C16orf97H3BN30 126 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 IFNL4K9M1U5 179 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 VCYO14598 125 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 HS3ST1O14792 307 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 EPB41L2O43491 1005 aaKnown RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 PLRG1O43660 514 aaKnown RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ZNF500O60304 480 aaPredicted RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 NDUFS7O75251 213 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 GPC4O75487 556 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 SOX30O94993 753 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 PMS2P2O95744 297 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 HEXAP06865 529 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 KRT19P08727 400 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CLTBP09497 229 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 RNF224P0DH78 156 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 IGHV4-30-4P0DP06 118 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CDH1P12830 882 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 SRCP12931 536 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ZNF182P17025 639 aaPredicted RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ANOS1P23352 680 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 RRM1P23921 792 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 NR2F2P24468 414 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CHATP28329 748 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 HNRNPH1P31943 449 aaKnown RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 SHMT1P34896 483 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ARL3P36405 182 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CPOXP36551 454 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 PPARGP37231 505 aaPredicted RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ARL1P40616 181 aaPredicted RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 PIP4K2AP48426 406 aaPredicted RBP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 METAP2P50579 478 aaKnown RBP eCLIP1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CLCNKAP51800 687 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 EFNA5P52803 228 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 TERF1P54274 439 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 GALCP54803 685 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 CD81P60033 236 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 KRTAP10-1P60331 282 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ISL1P61371 349 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 VAMP2P63027 116 aa1.09□□□□□ -2.23
SMARCB1-209ENST00000635578 ADORA2A-AS1P86434 159 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms