RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 SATB2Q9UPW6 733 aa4.85□□□□□ -1.63
LINC00550-201ENST00000629293 CCDC189A1A4V9 331 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 POM121BA6NF01 834 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 NEMP2A6NFY4 417 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 SMAD6O43541 496 aaKnown RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 CNTN5O94779 1100 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 TTC4O95801 387 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 IGLV3-27P01718 113 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 RHOCP08134 193 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 CCR1P32246 355 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 PPM1FP49593 454 aaPredicted RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 TMPRSS3P57727 454 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 SNX1Q13596 522 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 GRM3Q14832 879 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 RTP5Q14D33 572 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 POMZP3Q6PJE2 187 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 USP53Q70EK8 1073 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 PIGWQ7Z7B1 504 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 PHLDB2Q86SQ0 1253 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 CACNA2D3Q8IZS8 1091 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 NIPA2Q8N8Q9 360 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ZNF606Q8WXB4 792 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 IRGQQ8WZA9 623 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 FEM1AQ9BSK4 669 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 FOXP3Q9BZS1 431 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ACSS3Q9H6R3 686 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ACTR5Q9H9F9 607 aaPredicted RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 PARVAQ9NVD7 372 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 NINJ2Q9NZG7 142 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ASIC3Q9UHC3 531 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 KIAA1257Q9ULG3 409 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 A0A0D9SEW6 157 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 M0QYT0 321 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 DVL2O14641 736 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 LATO43561 262 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 LIASO43766 372 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ABHD2P08910 425 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 RBP3P10745 1247 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 CDK4P11802 303 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 GKP32189 559 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 GPD2P43304 727 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 RXRGP48443 463 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 NEK3P51956 506 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 E2F1Q01094 437 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 SULT2A1Q06520 285 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 IFT88Q13099 833 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 SGCGQ13326 291 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 PDE1CQ14123 709 aaPredicted RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 TMEM177Q53S58 311 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ANKRD20A8PQ5CZ79 823 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 PRRT3Q5FWE3 981 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 HIBCHQ6NVY1 386 aaPredicted RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 GUSBP11Q6P575 273 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 EFL1Q7Z2Z2 1120 aaKnown RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 RBFAQ8N0V3 343 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 DCBLD1Q8N8Z6 715 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 BBOF1Q8ND07 529 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 OR7D4Q8NG98 312 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 IFI44Q8TCB0 444 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 CCT6BQ92526 530 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 MAGEB10Q96LZ2 347 aaPredicted RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 ASPNQ9BXN1 380 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 POLR1BQ9H9Y6 1135 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 GFOD1Q9NXC2 390 aa4.84□□□□□ -1.63
LINC00550-201ENST00000629293 HEMK1Q9Y5R4 338 aaPredicted RBP4.84□□□□□ -1.63
LINC00550-201ENST00000629293 SHISA3A0PJX4 238 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 SMIM23A6NLE4 172 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 K7ESM1 405 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 MCF2LO15068 1137 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 PLRG1O43660 514 aaKnown RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 PIAS2O75928 621 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 CALB1P05937 261 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 CTSLP07711 333 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 TCF4P15884 667 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 TGM2P21980 687 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 ALAS2P22557 587 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 HNRNPA2B1P22626 353 aaKnown RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 GPR3P46089 330 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 SLCO1A2P46721 670 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 THOP1P52888 689 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 GSCP56915 257 aaPredicted RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 HNRNPKP61978 463 aaKnown RBP eCLIP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 RPL7AP62424 266 aaKnown RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 OGDHQ02218 1023 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 ITIH4Q14624 930 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 LLGL1Q15334 1064 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 STILQ15468 1287 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 LONRF1Q17RB8 773 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 GKAP1Q5VSY0 366 aaPredicted RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 DPY19L3Q6ZPD9 716 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 TAX1BP1Q86VP1 789 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 HORMAD1Q86X24 394 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 CCDC13Q8IYE1 715 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 WDTC1Q8N5D0 677 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 CCDC89Q8N998 374 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 KCT2Q8NC54 265 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 OR4C6Q8NH72 309 aa4.84□□□□□ -1.64
LINC00550-201ENST00000629293 PRR11Q96HE9 360 aaPredicted RBP4.84□□□□□ -1.64
LINC00550-201ENST00000629293 FAXDC2Q96IV6 333 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms