RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ABCG1P45844 678 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 GPX6P59796 221 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 GABREP78334 506 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CRADDP78560 199 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 SARNPP82979 210 aaKnown RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 SLC29A2Q14542 456 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 TCEA2Q15560 299 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CCDC38Q502W7 563 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CERCAMQ5T4B2 595 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CAPN12Q6ZSI9 719 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 C17orf82Q86X59 251 aaPredicted RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 IQCKQ8N0W5 287 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 OR2W6PQ8NHA6 318 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 WDR36Q8NI36 951 aaKnown RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 SCAMP4Q969E2 229 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CCDC74AQ96AQ1 378 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 HIC2Q96JB3 615 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 DCBLD2Q96PD2 775 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 GFM1Q96RP9 751 aaKnown RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 TRIM56Q9BRZ2 755 aaKnown RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 RIOK2Q9BVS4 552 aaKnown RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 FSD1LQ9BXM9 530 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CDH19Q9H159 772 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 FAM83DQ9H4H8 585 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 MAGEE1Q9HCI5 957 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 PKD2L2Q9NZM6 624 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 LRIT1Q9P2V4 623 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CD84Q9UIB8 345 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 SUFUQ9UMX1 484 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 NFS1Q9Y697 457 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CELSR3Q9NYQ7 3312 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 ZFYVE26Q68DK2 2539 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 ZNF106Q9H2Y7 1883 aaKnown RBP12.51□□□□□ -0.41
PNKP-217ENST00000625216 A0A0U1RQS6 177 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 C1orf232A0A0U1RR37 186 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 AGPSO00116 658 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 ABHD2P08910 425 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 NUDT17P0C025 328 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 SSTR1P30872 391 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 GNPDA1P46926 289 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 SPINT3P49223 89 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 CDK18Q07002 472 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 EIF3IQ13347 325 aaKnown RBP12.51□□□□□ -0.41
PNKP-217ENST00000625216 LRP8Q14114 963 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 CLPPQ16740 277 aaPredicted RBP12.51□□□□□ -0.41
PNKP-217ENST00000625216 RANBP10Q6VN20 620 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 RFLNAQ6ZTI6 216 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 KDELC2Q7Z4H8 507 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 LINC00523Q86TU6 105 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 NRROSQ86YC3 692 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 ZNF248Q8NDW4 579 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 CCL4L1Q8NHW4 92 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 PYROXD1Q8WU10 500 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 LRRC39Q96DD0 335 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 CFAP36Q96G28 342 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 ATXN7L3BQ96GX2 97 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 COX14Q96I36 57 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 TTC25Q96NG3 672 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 TMEM74Q96NL1 305 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 SMIM14Q96QK8 99 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 TRIB3Q96RU7 358 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 LRRN3Q9H3W5 708 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 ZFYVE1Q9HBF4 777 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 THSD1Q9NS62 852 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 RAD18Q9NS91 495 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 SPATS2LQ9NUQ6 558 aaKnown RBP12.51□□□□□ -0.41
PNKP-217ENST00000625216 TAAR2Q9P1P5 351 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 VPS18Q9P253 973 aa12.51□□□□□ -0.41
PNKP-217ENST00000625216 ASXL3Q9C0F0 2248 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 CCDC187A0A096LP49 1063 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 LOC285095A0A1B0GVY8 99 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 B4DGG1 531 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 FGF1P05230 155 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 RPLP0P05388 317 aaKnown RBP12.5□□□□□ -0.41
PNKP-217ENST00000625216 TPH1P17752 444 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 POLD2P49005 469 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 PCBP4P57723 403 aaKnown RBP12.5□□□□□ -0.41
PNKP-217ENST00000625216 CCL7P80098 99 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 CTBSQ01459 385 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 ZNF844Q08AG5 666 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 CDH17Q12864 832 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 PYCR3Q53H96 274 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 HENMT1Q5T8I9 393 aaKnown RBP12.5□□□□□ -0.41
PNKP-217ENST00000625216 ALS2CLQ60I27 953 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 STEAP4Q687X5 459 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 LRIG3Q6UXM1 1119 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 PDZD3Q86UT5 571 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 CCNJLQ8IV13 435 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 ARL14Q8N4G2 192 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 SLC25A41Q8N5S1 370 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 DNAAF3Q8N9W5 541 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 ZDHHC1Q8WTX9 485 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 CCDC97Q96F63 343 aaPredicted RBP12.5□□□□□ -0.41
PNKP-217ENST00000625216 LIN37Q96GY3 246 aaPredicted RBP12.5□□□□□ -0.41
PNKP-217ENST00000625216 SLC46A1Q96NT5 459 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 OR2M4Q96R27 311 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 AGAP2Q99490 1192 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 EBNA1BP2Q99848 306 aaKnown RBP12.5□□□□□ -0.41
PNKP-217ENST00000625216 STRADBQ9C0K7 418 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 SYNDIG1Q9H7V2 258 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms