RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GPR26Q8NDV2 337 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PHC3Q8NDX5 983 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 GRIN3AQ8TCU5 1115 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 SORCS1Q8WY21 1168 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PKP2Q99959 881 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 TCF25Q9BQ70 676 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 BATF3Q9NR55 127 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 MAP10Q9P2G4 905 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 EGFL7Q9UHF1 273 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 CRLS1Q9UJA2 301 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 OBSL1O75147 1896 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PFDN6O15212 129 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 BAIAP3O94812 1187 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ESR1P03372 595 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 UGT2B4P06133 528 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 RPS17P08708 135 aaKnown RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 SRCP12931 536 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 HSPA7P48741 367 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ERVPABLB-1P60509 514 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 AP1S1P61966 158 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 LETMD1Q6P1Q0 360 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ZNF783Q6ZMS7 281 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 DET1Q7L5Y6 550 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 TRIM74Q86UV6 250 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 TRIM73Q86UV7 250 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 CMTR2Q8IYT2 770 aaKnown RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 SLC25A23Q9BV35 468 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 MTG2Q9H4K7 406 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PIF1Q9H611 641 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ZDHHC6Q9H6R6 413 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 HACD3Q9P035 362 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 SLAMF8Q9P0V8 285 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 FAM8A1Q9UBU6 413 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PCDHGB4Q9UN71 923 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PSMD13Q9UNM6 376 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PCDHGB5Q9Y5G0 923 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 TRAV19A0A0A6YYK7 116 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 H7C0S8 307 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 MTX2O75431 263 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 RNASEH2AO75792 299 aaKnown RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 BCAS2O75934 225 aaPredicted RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 CTSAP10619 480 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 HTR6P50406 440 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 CCNHP51946 323 aaPredicted RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 UFM1P61960 85 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 PHKG1Q16816 387 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 MPPE1Q53F39 396 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 AARS2Q5JTZ9 985 aaKnown RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 CAPRIN2Q6IMN6 1127 aaKnown RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 IRGCQ6NXR0 463 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 HTR3DQ70Z44 454 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 IFNEQ86WN2 208 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 MIER2Q8N344 545 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 CHST14Q8NCH0 376 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 DLG3Q92796 817 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ERLEC1Q96DZ1 483 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 LRGUKQ96M69 825 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 TUBGCP5Q96RT8 1024 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 CRISPLD2Q9H0B8 497 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 SPAG4Q9NPE6 437 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 KIAA1522Q9P206 1035 aaPredicted RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 CROTQ9UKG9 612 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ZNF232Q9UNY5 417 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 VPS9D1Q9Y2B5 631 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 TRANK1O15050 2925 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 GLYATL1P3A0A0U1RQE8 302 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 TRIM38O00635 465 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 GIPC1O14908 333 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 LBPP18428 481 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 CLCN4P51793 760 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 TRIM25Q14258 630 aaKnown RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 TEAD2Q15562 447 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 FUT11Q495W5 492 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 RNF220Q5VTB9 566 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 LRRC66Q68CR7 880 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 SBSNQ6UWP8 590 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 DPY19L3Q6ZPD9 716 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 Q6ZVU0 165 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ZNF366Q8N895 744 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 OR2AP1Q8NGE2 309 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 DNAJB14Q8TBM8 379 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ACDQ96AP0 544 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 VOPP1Q96AW1 172 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ASIC4Q96FT7 647 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ATP13A3Q9H7F0 1226 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 ASAH2Q9NR71 780 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 LATS2Q9NRM7 1088 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 SPATS2LQ9NUQ6 558 aaKnown RBP10.49□□□□□ -0.73
CUX1-221ENST00000622516 DHRS7Q9Y394 339 aa10.49□□□□□ -0.73
CUX1-221ENST00000622516 FFAR3O14843 346 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 GPR42O15529 346 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ESRRBO95718 433 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 CAPN1P07384 714 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 LINGO3P0C6S8 592 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ZNF7P17097 686 aaPredicted RBP10.48□□□□□ -0.73
CUX1-221ENST00000622516 CDKN3Q16667 212 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 CRTC1Q6UUV9 634 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 GPRIN3Q6ZVF9 776 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 ADGRG6Q86SQ4 1221 aa10.48□□□□□ -0.73
CUX1-221ENST00000622516 FIBINQ8TAL6 211 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms