RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 S100GP29377 79 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 RCVRNP35243 200 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 CDKN2BP42772 138 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 CASP9P55211 416 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 NFATC2Q13469 925 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 TIGD2Q4W5G0 525 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SNRNP27Q8WVK2 155 aaKnown RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 AZIN2Q96A70 460 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 PNPLA8Q9NP80 782 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 A0A0J9YYE9 177 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 WNT9AO14904 365 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 IRAK2O43187 625 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 CHRNA1P02708 482 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 AQP1P29972 269 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 HSPB3Q12988 150 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SOWAHAQ2M3V2 549 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 NET1Q7Z628 596 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ALYREFQ86V81 257 aaKnown RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 APLFQ8IW19 511 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF540Q8NDQ6 660 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 TWIST2Q8WVJ9 160 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SLC9A7Q96T83 725 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 TRMOQ9BU70 441 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 APOBEC3GQ9HC16 384 aaKnown RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 GKN1Q9NS71 199 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 CNOT6Q9ULM6 557 aaKnown RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ERGIC3Q9Y282 383 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 KLHL18O94889 574 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 PSMG1O95456 288 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 NMBRP28336 390 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 OMPP47874 163 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SPIRE1Q08AE8 756 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 CHIT1Q13231 466 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 RFTN1Q14699 578 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 PDK4Q16654 411 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 KCTD19Q17RG1 926 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 COQ7Q99807 217 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 TIMM22Q9Y584 194 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ARL5AQ9Y689 179 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 EDDM13A0A1B0GTR0 161 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SERPINA6P08185 405 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ACP5P13686 325 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 CACNA2D1P54289 1103 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SULT1C3Q6IMI6 304 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 PTCHD4Q6ZW05 846 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF296Q8WUU4 475 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 ACDQ96AP0 544 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 EBPLQ9BY08 206 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 KLHL25Q9H0H3 589 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 PNO1Q9NRX1 252 aaKnown RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 DAPK2Q9UIK4 370 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 C3orf18Q9UK00 162 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 C9J4A7 227 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 DNM1LO00429 736 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CPN2P22792 545 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CCKBRP32239 447 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 NSG1P42857 185 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 KIR3DL1P43629 444 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 POLR2JP52435 117 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 FBXO48Q5FWF7 155 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 SPANXN2Q5MJ10 180 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 TXNDC8Q6A555 127 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 HIPK1Q86Z02 1210 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 STK32AQ8WU08 396 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 SMPDL3BQ92485 455 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ZFRQ96KR1 1074 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CCSER2Q9H7U1 834 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ACSS2Q9NR19 701 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 EFR3BQ9Y2G0 817 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 FAM86C2PA6NEL3 165 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 C2CD4BA6NLJ0 364 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 COL6A2P12110 1019 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 LAMP2P13473 410 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF8P17098 575 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 MAPK11Q15759 364 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 PUS10Q3MIT2 529 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CLEC20AQ6ZU45 233 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 BPIFB1Q8TDL5 484 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 DCUN1D5Q9BTE7 237 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 MCCC2Q9HCC0 563 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 XPNPEP1Q9NQW7 623 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 BBIP1A8MTZ0 92 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 KHDRBS3O75525 346 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 C2P06681 752 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 CYP4B1P13584 511 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 PNLIPRP1P54315 467 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 GK5Q6ZS86 529 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ALG3Q92685 438 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 NPAS2Q99743 824 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 BTBD1Q9H0C5 482 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 SDCBP2Q9H190 292 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ADGRE2Q9UHX3 823 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 GABRQQ9UN88 632 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ABCC6O95255 1503 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 A0A0U1RQF3 1178 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 OR5F1O95221 314 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 KCNA5P22460 613 aa11.26□□□□□ -0.61
CLIP1-219ENST00000620786 ATXN1P54253 815 aaKnown RBP11.26□□□□□ -0.61
CLIP1-219ENST00000620786 RPS24P62847 133 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms