RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PEBP4Q96S96 227 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 DPH2Q9BQC3 489 aaPredicted RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 ZNF670Q9BS34 389 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 SPATA16Q9BXB7 569 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TBC1D10AQ9BXI6 508 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 OR2AG1Q9H205 316 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ACTL8Q9H568 366 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ZFYVE1Q9HBF4 777 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 PCDH18Q9HCL0 1135 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 SLC40A1Q9NP59 571 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MLXIPLQ9NP71 852 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 LATS2Q9NRM7 1088 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 FANCLQ9NW38 375 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 RBM22Q9NW64 420 aaKnown RBP eCLIP6.19□□□□□ -1.42
CUX1-220ENST00000607092 SEMA5BQ9P283 1151 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 C5AR2Q9P296 337 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 FARSAQ9Y285 508 aaKnown RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 PADI2Q9Y2J8 665 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 PLEKHM1Q9Y4G2 1056 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MAP4K5Q9Y4K4 846 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TTLL3Q9Y4R7 772 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TACC2O95359 2948 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 UBA6A0AVT1 1052 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 TLCD2A6NGC4 264 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TMCO5BA8MYB1 307 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 MYO1FO00160 1098 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 CHUKO15111 745 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 EPHB6O15197 1021 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 IPO13O94829 963 aaKnown RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 CDK14O94921 469 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 CLDN7O95471 211 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 ZBTB11O95625 1053 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 EML2O95834 649 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 HBQ1P09105 142 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 RAB40ALP0C0E4 278 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 RARAP10276 462 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 ZNF8P17098 575 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 GNLYP22749 145 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 F8A1P23610 371 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 NDUFS1P28331 727 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 SLC19A1P41440 591 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 PRKCIP41743 596 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 SEPHS1P49903 392 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 GFERP55789 205 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 PER3P56645 1201 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TUBB4BP68371 445 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 HSD11B2P80365 405 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 KLHL30Q0D2K2 578 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 GALNT2Q10471 571 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TUBB2AQ13885 445 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 NAA30Q147X3 362 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 PAFAH1B3Q15102 231 aaKnown RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 INPP5JQ15735 1006 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 SLC14A2Q15849 920 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 ASIC2Q16515 512 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TDRD12Q587J7 1177 aaKnown RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 DNTTIP2Q5QJE6 756 aaKnown RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 ATP1A1-AS1Q5TC04 95 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 IZUMO3Q5VZ72 239 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 ARMC6Q6NXE6 501 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 IRGCQ6NXR0 463 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 RAB43Q86YS6 212 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 IQCKQ8N0W5 287 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 PGBD5Q8N414 524 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 PRR7Q8TB68 274 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 COG1Q8WTW3 980 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 CT55Q8WUE5 264 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 CPT1BQ92523 772 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 GLYATL1Q969I3 302 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 PNPLA2Q96AD5 504 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 VPS35Q96QK1 796 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 DHRS4Q9BTZ2 278 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TUBB2BQ9BVA1 445 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 GPR63Q9BZJ6 419 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 ING2Q9H160 280 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 TRABDQ9H4I3 376 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 MAGEE1Q9HCI5 957 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 FGF21Q9NSA1 209 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 AIPL1Q9NZN9 384 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 ATXN10Q9UBB4 475 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 CNOT6Q9ULM6 557 aaKnown RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 SNX7Q9UNH6 387 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 CHKBQ9Y259 395 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 VPS9D1Q9Y2B5 631 aa6.18□□□□□ -1.42
CUX1-220ENST00000607092 DNMT3AQ9Y6K1 912 aaPredicted RBP6.18□□□□□ -1.42
CUX1-220ENST00000607092 TTC24A2A3L6 582 aaPredicted RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 PPP1R12AO14974 1030 aaPredicted RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 SCRG1O75711 98 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 CEACAM4O75871 244 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 SORBS2O94875 1100 aaKnown RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 ZFXP17010 805 aaPredicted RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 ZNF28P17035 718 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 SSR1P43307 286 aaKnown RBP6.17□□□□□ -1.42
CUX1-220ENST00000607092 CCL11P51671 97 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 ADCY2Q08462 1091 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 PRKAA1Q13131 559 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 GPR18Q14330 331 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 PLCL1Q15111 1095 aa6.17□□□□□ -1.42
CUX1-220ENST00000607092 NR6A1Q15406 480 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms