RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 RPS6KL1Q9Y6S9 549 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 MN1Q10571 1320 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 ZNF487B1APH4 448 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 GPR89AB7ZAQ6 455 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 VEGFDO43915 354 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 MFAP3LO75121 409 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 GPR89BP0CG08 455 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 BRAFP15056 766 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 VCLP18206 1134 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 CD68P34810 354 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 DLSTP36957 453 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 SLC1A1P43005 524 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 ABHD18Q0P651 414 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 TFDP2Q14188 446 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 GPR18Q14330 331 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 CHRNA6Q15825 494 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 PPP2R5EQ16537 467 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 SIRPB2Q5JXA9 342 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 LRRC38Q5VT99 294 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 C6orf15Q6UXA7 325 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 BZW1Q7L1Q6 419 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 PID1Q7Z2X4 250 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 VSTM4Q8IW00 320 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 ESX1Q8N693 406 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 IPMKQ8NFU5 416 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 CATSPER2Q96P56 530 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 TRIT1Q9H3H1 467 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 FAM8A1Q9UBU6 413 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 LNPEPQ9UIQ6 1025 aa17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 TMEM184BQ9Y519 407 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-223ENST00000600552 GPR39O43194 453 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 POP7O75817 140 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 KIAA0754O94854 1291 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 HALP42357 657 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 CDKN2BP42772 138 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 WASHC5Q12768 1159 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 PRKD1Q15139 912 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 SPOCD1Q6ZMY3 1216 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 VSIG1Q86XK7 387 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 C9orf43Q8TAL5 461 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 P3H4Q92791 437 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 TADA1Q96BN2 335 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 STAMBPL1Q96FJ0 436 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 SRPK1Q96SB4 655 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 C10orf88Q9H8K7 445 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 UCK1Q9HA47 277 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 IL26Q9NPH9 171 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 SIDT1Q9NXL6 827 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 WDR37Q9Y2I8 494 aa17.27■□□□□ 0.36
SHKBP1-223ENST00000600552 OR2AG2A6NM03 316 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 NDUFA10O95299 355 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 DLGAP3O95886 979 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 C9P02748 559 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 F8A1P23610 371 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 AKT1P31749 480 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 SPAM1P38567 509 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 STAT5AP42229 794 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 MAGEA1P43355 309 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 NR2C2P49116 596 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 PPP1CAP62136 330 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 MC1RQ01726 317 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 ADCY2Q08462 1091 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 ERV3-1Q14264 604 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 PTPRCAPQ14761 206 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 TMEM220Q6QAJ8 160 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 KDELC1Q6UW63 502 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 ABRAXAS1Q6UWZ7 409 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 DET1Q7L5Y6 550 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 GLT6D1Q7Z4J2 308 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 AMZ2Q86W34 360 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 NAT14Q8WUY8 206 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 ZDHHC12Q96GR4 267 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 HEMGNQ9BXL5 484 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 SLC40A1Q9NP59 571 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 POT1Q9NUX5 634 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 NFKBIL1Q9UBC1 381 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 CROTQ9UKG9 612 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 TFR2Q9UP52 801 aa17.26■□□□□ 0.35
SHKBP1-223ENST00000600552 ZNF106Q9H2Y7 1883 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 CYSRT1A8MQ03 144 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 ANKRD34CP0C6C1 535 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 CCNYL3P0C7X3 344 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 CA5AP35218 305 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 ARL4DP49703 201 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 CTSCP53634 463 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 PLCL1Q15111 1095 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 SLC14A2Q15849 920 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 IGFBP7Q16270 282 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 CCDC181Q5TID7 509 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 ZNF567Q8N184 647 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 RASGEF1AQ8N9B8 481 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 GPR150Q8NGU9 434 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 BRSK1Q8TDC3 778 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 APOBEC4Q8WW27 367 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 OXNAD1Q96HP4 312 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 MRGPRX2Q96LB1 330 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 VPS35Q96QK1 796 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 TSPY26PQ9H489 355 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 ZNF768Q9H5H4 540 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 RSPH14Q9UHP6 348 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms