RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MT-ND3P03897 115 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 CYP1A2P05177 515 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 PIRTP0C851 137 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MYBL1P10243 752 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 BPIP17213 487 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 FECHP22830 423 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 RPL10P27635 214 aaKnown RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 CD86P42081 329 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 CCL11P51671 97 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MYL5Q02045 173 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 GPS2Q13227 327 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MRPL49Q13405 166 aaKnown RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 KCNAB1Q14722 419 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ASIC2Q16515 512 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 TDRD12Q587J7 1177 aaKnown RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 PLEKHS1Q5SXH7 462 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 PDPK2PQ6A1A2 396 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 JMJD6Q6NYC1 403 aaPredicted RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 CRTC3Q6UUV7 619 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 FAM92BQ6ZTR7 304 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 SYVN1Q86TM6 617 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 LRRTM4Q86VH4 590 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 BPHLQ86WA6 291 aaPredicted RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 PHYKPLQ8IUZ5 450 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 RBM12BQ8IXT5 1001 aaKnown RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 D2HGDHQ8N465 521 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 TRAM1L1Q8N609 369 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 GLIS1Q8NBF1 620 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 UBXN4Q92575 508 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ZNF501Q96CX3 271 aaPredicted RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 HDAC11Q96DB2 347 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ZDHHC12Q96GR4 267 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MAP3K3Q99759 626 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 SLC25A23Q9BV35 468 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 NUP85Q9BW27 656 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 SPATA16Q9BXB7 569 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ZMYND15Q9H091 742 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ING2Q9H160 280 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 OSGEPL1Q9H4B0 414 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 OCEL1Q9H607 264 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ZFYVE1Q9HBF4 777 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MAGEE1Q9HCI5 957 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MRPL47Q9HD33 250 aaKnown RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 FGF21Q9NSA1 209 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 POT1Q9NUX5 634 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 CHMP5Q9NZZ3 219 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 ERRFI1Q9UJM3 462 aaPredicted RBP5.99□□□□□ -1.45
VRK3-220ENST00000600259 RARRES3Q9UL19 164 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 SHOC2Q9UQ13 582 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 DNAJC16Q9Y2G8 782 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 PCDHGB7Q9Y5F8 929 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 CSMD1Q96PZ7 3565 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 OTOGQ6ZRI0 2925 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 APCP25054 2843 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 A1L4Q6 167 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 ARGFXA6NJG6 315 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 KCNK1O00180 336 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 RASSF9O75901 435 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 CDK14O94921 469 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 CBX6O95503 412 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 EBLN1P0CF75 366 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 CDK11BP21127 795 aaKnown RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 IDSP22304 550 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 CASP14P31944 242 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 DCTP40126 519 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 PTGIRP43119 386 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 PGDP52209 483 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 CTSCP53634 463 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 DRG2P55039 364 aaKnown RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 ITGA1P56199 1179 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 TAS2R40P59535 323 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 IFI35P80217 286 aaPredicted RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 DMPKQ09013 629 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 KLHL30Q0D2K2 578 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 TMEM115Q12893 351 aaPredicted RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 ZBTB17Q13105 803 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 TUBB3Q13509 450 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 GALNT3Q14435 633 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 SEPT7Q16181 437 aaKnown RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 RPE65Q16518 533 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 INSCQ1MX18 579 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 PLEKHN1Q494U1 663 aaPredicted RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 ATP13A5Q4VNC0 1218 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 ZNF789Q5FWF6 425 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 CCDC122Q5T0U0 273 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 PRAMEF17Q5VTA0 474 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 FAM69BQ5VUD6 431 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 IZUMO3Q5VZ72 239 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 ALS2CLQ60I27 953 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 SLC6A19Q695T7 634 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 TIGD7Q6NT04 549 aaPredicted RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 IRGCQ6NXR0 463 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 FAM83HQ6ZRV2 1179 aaPredicted RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 MAMDC2Q7Z304 686 aaPredicted RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 KMT5CQ86Y97 462 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 TICAM1Q8IUC6 712 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 TRIM48Q8IWZ4 208 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 ZBTB2Q8N680 514 aa5.98□□□□□ -1.45
VRK3-220ENST00000600259 SIDT2Q8NBJ9 832 aaKnown RBP5.98□□□□□ -1.45
VRK3-220ENST00000600259 FDCSPQ8NFU4 85 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms