RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TMBIM1Q969X1 311 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 FEM1CQ96JP0 617 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 MRM3Q9HC36 420 aaKnown RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 MARCH2Q9P0N8 246 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CBX4O00257 560 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 RPP40O75818 363 aaKnown RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 SLC2A4P14672 509 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CCNA2P20248 432 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 MTHFRP42898 656 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CHRNB3Q05901 458 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 TWF1Q12792 350 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 ATP6AP1Q15904 470 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 LGI2Q8N0V4 545 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 ZUFSPQ96AP4 578 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 EGFL8Q99944 293 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 GPATCH1Q9BRR8 931 aaKnown RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 LEF1Q9UJU2 399 aaPredicted RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 TRPV2Q9Y5S1 764 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 RASAL1O95294 804 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 CHRNA1P02708 482 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 CYP4B1P13584 511 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 FDXRP22570 491 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 PSMD8P48556 350 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 MEP1AQ16819 746 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 PLEKHA8Q96JA3 519 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 CIDEBQ9UHD4 219 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 UTS2RQ9UKP6 389 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 SPO11Q9Y5K1 396 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 SH3PXD2BA1X283 911 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 H0YJX3 145 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 HS6ST1O60243 411 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 CAPN1P07384 714 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 G6PDP11413 515 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 GSSP48637 474 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 DGCR6Q14129 220 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 AASDHQ4L235 1098 aaPredicted RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 INTS11Q5TA45 600 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 LCN8Q6JVE9 175 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 GPSM1Q86YR5 675 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 FAM86B1Q8N7N1 296 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 OR10A6Q8NH74 314 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 ZC3H15Q8WU90 426 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 GFM2Q969S9 779 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 ATOH8Q96SQ7 321 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 HEPHQ9BQS7 1158 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 SEZ6LQ9BYH1 1024 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 SYTL2Q9HCH5 934 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 AFF4Q9UHB7 1163 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 DAPK2Q9UIK4 370 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 ANGPTL3Q9Y5C1 460 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 ACOX3O15254 700 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 SNAP91O60641 907 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 GSNP06396 782 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 ATXN1LP0C7T5 689 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 TCF3P15923 654 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 IL12AP29459 219 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 SHMT2P34897 504 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 KCNQ1P51787 676 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 TNK2Q07912 1038 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 LINGO4Q6UY18 593 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 GPRIN3Q6ZVF9 776 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 PIWIL3Q7Z3Z3 882 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 ARRDC2Q8TBH0 407 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 AARSD1Q9BTE6 412 aaKnown RBP15.1■□□□□ 0.01
UPF1-204ENST00000596842 TRIM62Q9BVG3 475 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 FKBPLQ9UIM3 349 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 GPR45Q9Y5Y3 372 aa15.1■□□□□ 0.01
UPF1-204ENST00000596842 K7EPI3 171 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 GPIP06744 558 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 IRF1P10914 325 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 HSD17B1P14061 328 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 GDF5P43026 501 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 RPL38P63173 70 aaKnown RBP15.09■□□□□ 0.01
UPF1-204ENST00000596842 PRKG2Q13237 762 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 PTGR1Q14914 329 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 KANK2Q63ZY3 851 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 FAM171BQ6P995 826 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 C16orf59Q7L2K0 433 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 GALNT5Q7Z7M9 940 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 ZNF280BQ86YH2 543 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 TBC1D21Q8IYX1 336 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 BBS5Q8N3I7 341 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 FAM162AQ96A26 154 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 GLT1D1Q96MS3 346 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 PPP1R2P1Q96PQ5 205 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 UHRF1Q96T88 793 aaPredicted RBP15.09■□□□□ 0.01
UPF1-204ENST00000596842 HACD3Q9P035 362 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 ZNHIT2Q9UHR6 403 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 PCDHA9Q9Y5H5 950 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 MYLKQ15746 1914 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 ASPDHA6ND91 283 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 TNPO2O14787 897 aaKnown RBP15.09■□□□□ 0.01
UPF1-204ENST00000596842 PEX11BO96011 259 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 FCGR1AP12314 374 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 MAGP20916 626 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 DNAJB1P25685 340 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 BMXP51813 675 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 NEK2P51955 445 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 STC1P52823 247 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 MRPS15P82914 257 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms