RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SDR16C5Q8N3Y7 309 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 NAT8LQ8N9F0 302 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 MNS1Q8NEH6 495 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 OR4C6Q8NH72 309 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 GLMNQ92990 594 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 DCUN1D1Q96GG9 259 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 SNF8Q96H20 258 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 SEMA4CQ9C0C4 833 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 TMEM168Q9H0V1 697 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 FAM96AQ9H5X1 160 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 EVA1BQ9NVM1 165 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 ATXN10Q9UBB4 475 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 RIMKLBQ9ULI2 386 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 LRP4O75096 1905 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 ZNF106Q9H2Y7 1883 aaKnown RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 GPR89AB7ZAQ6 455 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 B8ZZF3 427 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 LMO7DNF2Z398 122 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 H7C0S8 307 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 GAPDHSO14556 408 aaPredicted RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 TPP1O14773 563 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 GRID2O43424 1007 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 AVILO75366 819 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 DXOO77932 396 aaKnown RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 MPOP05164 745 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 GPR89BP0CG08 455 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 RALBP11234 206 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 ZNF8P17098 575 aaPredicted RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 MRPS25P82663 173 aaKnown RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 XIAPP98170 497 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 CACNG1Q06432 222 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 TMEM115Q12893 351 aaPredicted RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 PEX6Q13608 980 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 LY6DQ14210 128 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 GPR33Q49SQ1 333 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 GPRC6AQ5T6X5 926 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 AFTPHQ6ULP2 937 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 CRTC3Q6UUV7 619 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 ZNF534Q76KX8 674 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 CHST15Q7LFX5 561 aaPredicted RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 ZNF572Q7Z3I7 529 aaPredicted RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 ADGRG6Q86SQ4 1221 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 HOOK3Q86VS8 718 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 LSMEM2Q8N112 164 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 FAM181AQ8N9Y4 354 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 BBOF1Q8ND07 529 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 OR6P1Q8NGX9 317 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 PTCD2Q8WV60 388 aaKnown RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 PEX13Q92968 403 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 HDAC10Q969S8 669 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 SERPINB12Q96P63 405 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 CLPBQ9H078 707 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 CHRAC1Q9NRG0 131 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 SMOXQ9NWM0 555 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 TRNAU1APQ9NX07 287 aaKnown RBP17.02■□□□□ 0.32
CLN3-217ENST00000565354 SLC2A6Q9UGQ3 507 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 ANAPC5Q9UJX4 755 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 PRKAB1Q9Y478 270 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 MRFAP1Q9Y605 127 aa17.02■□□□□ 0.32
CLN3-217ENST00000565354 SDR42E2A6NKP2 422 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 CFAP99D6REC4 459 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 SMAPO00193 183 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 YY2O15391 372 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 RAD51CO43502 376 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 NUAK1O60285 661 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 DNAJC6O75061 913 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 CELA2BP08218 269 aaPredicted RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 PAMP19021 973 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 GABREP78334 506 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 CALCOCO2Q13137 446 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 MORF4L2Q15014 288 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 PYCR3Q53H96 274 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 DNAJC21Q5F1R6 531 aaKnown RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 CDCP2Q5VXM1 449 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 ZCCHC8Q6NZY4 707 aaKnown RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 C8orf74Q6P047 294 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 LRRTM4Q86VH4 590 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 CAND1Q86VP6 1230 aaKnown RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 TRAPPC5Q8IUR0 188 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 OTUD6BQ8N6M0 293 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 DDHD1Q8NEL9 900 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 SCARF2Q96GP6 870 aaPredicted RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 TTC1Q99614 292 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 RAB17Q9H0T7 212 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 MRM3Q9HC36 420 aaKnown RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 SOX13Q9UN79 622 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 SNX24Q9Y343 169 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 UTP11Q9Y3A2 253 aaKnown RBP17.01■□□□□ 0.31
CLN3-217ENST00000565354 MAD1L1Q9Y6D9 718 aa17.01■□□□□ 0.31
CLN3-217ENST00000565354 CCDC162PA2VCL2 907 aa17■□□□□ 0.31
CLN3-217ENST00000565354 CTAGE15A4D2H0 777 aa17■□□□□ 0.31
CLN3-217ENST00000565354 OR51F1A6NGY5 319 aa17■□□□□ 0.31
CLN3-217ENST00000565354 KMOO15229 486 aa17■□□□□ 0.31
CLN3-217ENST00000565354 FUCA1P04066 466 aa17■□□□□ 0.31
CLN3-217ENST00000565354 CTAGE8P0CG41 777 aa17■□□□□ 0.31
CLN3-217ENST00000565354 ACP5P13686 325 aa17■□□□□ 0.31
CLN3-217ENST00000565354 ACTR1BP42025 376 aa17■□□□□ 0.31
CLN3-217ENST00000565354 LSSP48449 732 aa17■□□□□ 0.31
CLN3-217ENST00000565354 ARSDP51689 593 aa17■□□□□ 0.31
CLN3-217ENST00000565354 ITGA8P53708 1063 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms