RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ARPC2O15144 300 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 NDUFB10O96000 172 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 PRKAR2AP13861 404 aaKnown RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 CDK8P49336 464 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CAPZA1P52907 286 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TRIM28Q13263 835 aaKnown RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 SYT16Q17RD7 645 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 ZNF574Q6ZN55 896 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 UFD1Q92890 307 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 SLC9A7Q96T83 725 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.21□□□□□ -1.42
CLK3-212ENST00000563418 PDP1Q9P0J1 537 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 ADGRE2Q9UHX3 823 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 MEIOCA2RUB1 952 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 KPNA6O60684 536 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CYP7B1O75881 506 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 VNN2O95498 520 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 KDELR1P24390 212 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 ALDH3B2P48448 385 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 ATP4BP51164 291 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 BCL2A1Q16548 175 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 KNDC1Q76NI1 1749 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 MOSPD2Q8NHP6 518 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TEFMQ96QE5 360 aaKnown RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 SETD4Q9NVD3 440 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TBC1D24Q9ULP9 559 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 HRH3Q9Y5N1 445 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 PPLO60437 1756 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 ARHGEF28Q8N1W1 1705 aaKnown RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 HSPA14Q0VDF9 509 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TUBB3Q13509 450 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 ZNF234Q14588 700 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 STXBP2Q15833 593 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CDNFQ49AH0 187 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CHSY3Q70JA7 882 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TFAP2DQ7Z6R9 452 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 RALGPS2Q86X27 583 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 PHF13Q86YI8 300 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 ZNF655Q8N720 491 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 SLC7A14Q8TBB6 771 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 SP110Q9HB58 689 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TCF7L1Q9HCS4 588 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 PPP2R3BQ9Y5P8 575 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TARBP1Q13395 1621 aaKnown RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 USP17L5A8MUK1 530 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 SUV39H1O43463 412 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 DGAT1O75907 488 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 THEGLP0DJG4 465 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CKMT2P17540 419 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CCNA1P78396 465 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 SHROOM1Q2M3G4 852 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 KLHL22Q53GT1 634 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 FBXO42Q6P3S6 717 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 ZNF720Q7Z2F6 126 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CUZD1Q86UP6 607 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CIR1Q86X95 450 aaPredicted RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 DENND1AQ8TEH3 1009 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 TSPEARQ8WU66 669 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 DCAKDQ8WVC6 231 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 CLIP3Q96DZ5 547 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 OPA3Q9H6K4 179 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 C3orf14Q9HBI5 128 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 WASH6PQ9NQA3 447 aa6.21□□□□□ -1.42
CLK3-212ENST00000563418 RPL36Q9Y3U8 105 aaKnown RBP6.21□□□□□ -1.42
CLK3-212ENST00000563418 PCDHGA12O60330 932 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 PPP2R1BP30154 601 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 APBA2Q99767 749 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 SIAEQ9HAT2 523 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 POU2F3Q9UKI9 436 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 PHRF1Q9P1Y6 1649 aaKnown RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 ELOVL7A1L3X0 281 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 ASB14A6NK59 587 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 RSL1D1O76021 490 aaKnown RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 IL2RBP14784 551 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 MSR1P21757 451 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 MSX2P35548 267 aaPredicted RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 CHI3L1P36222 383 aaPredicted RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 MAGEA12P43365 314 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 ARSFP54793 590 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 PLD1Q13393 1074 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 SMG7Q92540 1137 aaKnown RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 EBF4Q9BQW3 602 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 UNKLQ9H9P5 680 aaKnown RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 SNTG1Q9NSN8 517 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 PTGFRNQ9P2B2 879 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 PKP3Q9Y446 797 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 OAS3Q9Y6K5 1087 aaKnown RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 BCAS1O75363 584 aaPredicted RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 NFICP08651 508 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 ACADLP28330 430 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 FEN1P39748 380 aaKnown RBP6.2□□□□□ -1.42
CLK3-212ENST00000563418 UGT2B15P54855 530 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 RGS1Q08116 209 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 BAK1Q16611 211 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 BEND4Q6ZU67 534 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 SSX6Q7RTT6 188 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 LSMEM2Q8N112 164 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 CCDC24Q8N4L8 307 aa6.2□□□□□ -1.42
CLK3-212ENST00000563418 FBXL20Q96IG2 436 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms