RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PIANPQ8IYJ0 282 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 AGGF1Q8N302 714 aaeCLIP9.94□□□□□ -0.82
USP3-216ENST00000559873 RASGEF1AQ8N9B8 481 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 OR2I1PQ8NGU4 316 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 FCRL3Q96P31 734 aaPredicted RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 PANX3Q96QZ0 392 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 CCDC68Q9H2F9 335 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 SLC32A1Q9H598 525 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 IL21RQ9HBE5 538 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 NLGN3Q9NZ94 848 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 TXNDC16Q9P2K2 825 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 CDV3Q9UKY7 258 aaKnown RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 NFU1Q9UMS0 254 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 PCDHB1Q9Y5F3 818 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ZNF292O60281 2723 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 UBA6A0AVT1 1052 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 H3BMM5 538 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 CDX4O14627 284 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 SCAMP1O15126 338 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 ESR1P03372 595 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 TUBBP07437 444 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 SLC1A2P43004 574 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 CARSP49589 748 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 CDKN1CP49918 316 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 CTBSQ01459 385 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 MGAT5Q09328 741 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 FASTKD3Q14CZ7 662 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 TMED2Q15363 201 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 SHBQ15464 509 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 TRADDQ15628 312 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 PLA2G4EQ3MJ16 856 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 KHDC1Q4VXA5 237 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 HSP90AA5PQ58FG0 334 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 ZNF648Q5T619 568 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 ZCCHC8Q6NZY4 707 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 CAPN12Q6ZSI9 719 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 DET1Q7L5Y6 550 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 AMZ2Q86W34 360 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 GATAD2AQ86YP4 633 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 CILP2Q8IUL8 1156 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 RELL1Q8IUW5 271 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 IGDCC3Q8IVU1 814 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 NAXDQ8IW45 347 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 CNTN4Q8IWV2 1026 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 AVL9Q8NBF6 648 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 LRRN4CLQ8ND94 238 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 GPBAR1Q8TDU6 330 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 SETD7Q8WTS6 366 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 LINC00615Q96LM1 132 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 C9orf72Q96LT7 481 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 TRIM56Q9BRZ2 755 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 TMEM168Q9H0V1 697 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 TCEAL2Q9H3H9 227 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 OSGEPL1Q9H4B0 414 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 STN1Q9H668 368 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 RXFP3Q9NSD7 469 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 IARS2Q9NSE4 1012 aaKnown RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 MARCH4Q9P2E8 410 aaPredicted RBP9.93□□□□□ -0.82
USP3-216ENST00000559873 KLF15Q9UIH9 416 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 COMMD10Q9Y6G5 202 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 LRP4O75096 1905 aa9.93□□□□□ -0.82
USP3-216ENST00000559873 TMEM131Q92545 1883 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 MGAT4DA6NG13 374 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 PDZK1P1A8MUH7 402 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 GOLGA8KD6RF30 607 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 E5RI56 91 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 GOLGA8TH3BQL2 631 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 SLC30A4O14863 429 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 KPNA5O15131 536 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 FFAR2O15552 330 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 GDF9O60383 454 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 PRSS56P0CW18 603 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 ERVK-10P10266 1014 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 IDSP22304 550 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 ECHS1P30084 290 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 HALP42357 657 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 CD151P48509 253 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 RPIAP49247 311 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 CLCNKAP51800 687 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 CTSCP53634 463 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 ADARP55265 1226 aaKnown RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 EIF3BP55884 814 aaKnown RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 B4GALNT1Q00973 533 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 PLOD1Q02809 727 aaPredicted RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 DMPKQ09013 629 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 BNIP3Q12983 259 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 BIRC2Q13490 618 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 NAB1Q13506 487 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 C1orf61Q13536 156 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 SEMA3AQ14563 771 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 SMAD1Q15797 465 aaKnown RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 SYTL3Q4VX76 610 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 C6orf132Q5T0Z8 1188 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 PTRHD1Q6GMV3 140 aaKnown RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 SLC30A9Q6PML9 568 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 GALNT7Q86SF2 657 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 ALYREFQ86V81 257 aaKnown RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 SLC26A11Q86WA9 606 aa9.92□□□□□ -0.82
USP3-216ENST00000559873 BEND7Q8N7W2 519 aaPredicted RBP9.92□□□□□ -0.82
USP3-216ENST00000559873 ARL10Q8N8L6 244 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms