RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZNF711Q9Y462 761 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 COMMD3-BMI1R4GMX3 469 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 KIAA1671Q9BY89 1806 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF106Q9H2Y7 1883 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 MICAL3Q7RTP6 2002 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CXorf51AA0A1B0GTR3 108 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 A0A1W2PP18 115 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 FAM234BA2RU67 622 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CDC7O00311 574 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RAD51BO15315 384 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ADAM12O43184 909 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TBL1XO60907 577 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SOCS5O75159 536 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 NIPSNAP2O75323 286 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 EEDO75530 441 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 DKK1O94907 266 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 KLKB1P03952 638 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GPIP06744 558 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LINC00032P0C843 101 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 MBL2P11226 248 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CHRM3P20309 590 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 MSH3P20585 1137 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RPL5P46777 297 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CSNK1DP48730 415 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SGSHP51688 502 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CCNHP51946 323 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CREB5Q02930 508 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CREMQ03060 361 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 DYNC1I2Q13409 638 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CDH18Q13634 790 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RCAN2Q14206 197 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GPNMBQ14956 572 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PCBP2Q15366 365 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ATP6AP1LQ52LC2 224 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SETMARQ53H47 684 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 FOXB2Q5VYV0 432 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PSAPL1Q6NUJ1 521 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RETSATQ6NUM9 610 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 METTL2BQ6P1Q9 378 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TAS2R42Q7RTR8 314 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ERMP1Q7Z2K6 904 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ITIH5Q86UX2 942 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RBFAQ8N0V3 343 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CARNMT1Q8N4J0 409 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SIDT2Q8NBJ9 832 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 FAM156AQ8NDB6 213 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SH3RF2Q8TEC5 729 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 NCSTNQ92542 709 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LRRC58Q96CX6 371 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 NSUN5Q96P11 429 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 HAUS8Q9BT25 410 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 C2orf49Q9BVC5 232 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CLPBQ9H078 707 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 P2RY12Q9H244 342 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TUBB1Q9H4B7 451 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 FBRSL1Q9HCM7 1045 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 IL17CQ9P0M4 197 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 THEGQ9P2T0 379 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 APPL1Q9UKG1 709 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF510Q9Y2H8 683 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 DHRS7Q9Y394 339 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PCDHGC4Q9Y5F7 938 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GPR45Q9Y5Y3 372 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 DHRS12A0PJE2 317 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 CCDC154A6NI56 674 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 NME4O00746 187 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PRRG1O14668 218 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 FZD6O60353 706 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 TSPAN3O60637 253 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PGLSO95336 258 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 SEC24AO95486 1093 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 TSPAN12O95859 305 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 CLPTM1O96005 669 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 MT-CO1P00395 513 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 URODP06132 367 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PRSS56P0CW18 603 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 SMIM18P0DKX4 95 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 UMPSP11172 480 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 BMP2P12643 396 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF26P17031 533 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ATF4P18848 351 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 HDCP19113 662 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ITGALP20701 1170 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 CAPN3P20807 821 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 MSX2P35548 267 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 HMGCLP35914 325 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ATXN3P54252 364 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 EPHB3P54753 998 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 FOXA1P55317 472 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 EEFSECP57772 596 aaKnown RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 TXNL4AP83876 142 aaKnown RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 NFYCQ13952 458 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 RAB33AQ14088 237 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 IKBKEQ14164 716 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 MAP7Q14244 749 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 GRB7Q14451 532 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 SMU1Q2TAY7 513 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 INTS11Q5TA45 600 aaKnown RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF787Q6DD87 383 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms