RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 AFTPHQ6ULP2 937 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 GPRIN3Q6ZVF9 776 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 TMEM199Q8N511 208 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 MFSD2AQ8NA29 543 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 RNF217Q8TC41 542 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 BCL7CQ8WUZ0 217 aaPredicted RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 SGCDQ92629 289 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 BOCQ9BWV1 1114 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 POPDC3Q9HBV1 291 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 MARCH5Q9NX47 278 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 GALNT8Q9NY28 637 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 TRMT6Q9UJA5 497 aaKnown RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 PHF24Q9UPV7 400 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 FADS3Q9Y5Q0 445 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 C2orf81A6NN90 581 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 ANKRD66B4E2M5 251 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 CD160O95971 181 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 MAGEA11P43364 429 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 TWF1Q12792 350 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 BNIP2Q12982 314 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 MRPL58Q14197 206 aaKnown RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 TAF1AQ15573 450 aaPredicted RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 ATXN7L2Q5T6C5 722 aaPredicted RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 INTS11Q5TA45 600 aaKnown RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 IL27RAQ6UWB1 636 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 NAT16Q8N8M0 369 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 HSPBAP1Q96EW2 488 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 CHID1Q9BWS9 393 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 SMPD4Q9NXE4 827 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 CDH23Q9H251 3354 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 FFAR3O14843 346 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 GPR42O15529 346 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 F11P03951 625 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 UROSP10746 265 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 MYF6P23409 242 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 POLR2IP36954 125 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 SLC11A1P49279 550 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 IL2P60568 153 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 PTGR1Q14914 329 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 OGFOD2Q6N063 350 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 METTL6Q8TCB7 284 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 ISOC1Q96CN7 298 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 RNF38Q9H0F5 515 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 CARS2Q9HA77 564 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 FARSBQ9NSD9 589 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 SLC38A8A6NNN8 435 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 E5RI56 91 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 K7ERQ8 282 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 VPS26AO75436 327 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 ATE1O95260 518 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 RASAL1O95294 804 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 EOMESO95936 686 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 LPOP22079 712 aaPredicted RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 ELK4P28324 431 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 GKP32189 559 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 ABRAXAS2Q15018 415 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 RNF219Q5W0B1 726 aaPredicted RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 ALG1LQ6GMV1 187 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 PRMT9Q6P2P2 845 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 DNAJC14Q6Y2X3 702 aaPredicted RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 HS3ST5Q8IZT8 346 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 DTWD1Q8N5C7 304 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 TET1Q8NFU7 2136 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 FAM81AQ8TBF8 368 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.73□□□□□ -0.372e-6■■■■□ 26.2
LDLR-207ENST00000558013 C12orf43Q96C57 262 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 TRIM54Q9BYV2 358 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 NSUN3Q9H649 340 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 OLA1Q9NTK5 396 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 RHBDL2Q9NX52 303 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 PCDHB9Q9Y5E1 797 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 TMEM88BA6NKF7 163 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 H0Y858 1186 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 INPPL1O15357 1258 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 STX7O15400 261 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 COCHO43405 550 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 EEDO75530 441 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 MZF1P28698 734 aaPredicted RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 ARF5P84085 180 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 RING1Q06587 406 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 GPR17Q13304 367 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 NEDD8Q15843 81 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 GPR107Q5VW38 600 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 DLEU7Q6UYE1 221 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 SPRED1Q7Z699 444 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 PEX13Q92968 403 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 TRIM15Q9C019 465 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 MAGEH1Q9H213 219 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 ABCG8Q9H221 673 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 NTN4Q9HB63 628 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 NMRK2Q9NPI5 230 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 TLR9Q9NR96 1032 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 ANAPC2Q9UJX6 822 aa12.73□□□□□ -0.37
LDLR-207ENST00000558013 FCF1Q9Y324 198 aaKnown RBP12.73□□□□□ -0.37
LDLR-207ENST00000558013 PLXNA3P51805 1871 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 UNC80Q8N2C7 3258 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 SYCE1LA8MT33 242 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ZDHHC11BP0C7U3 371 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 CD247P20963 164 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ATP5C1P36542 298 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms