RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CASC4Q6P4E1 433 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 ZNF572Q7Z3I7 529 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 C17orf82Q86X59 251 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 OR4L1Q8NH43 312 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 CCDC74AQ96AQ1 378 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 DCUN1D1Q96GG9 259 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 MRM3Q9HC36 420 aaKnown RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 PRDM8Q9NQV8 689 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 RABGEF1Q9UJ41 708 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 WASF3Q9UPY6 502 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 IGF2RP11717 2491 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 A6NCN8 305 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 PRR19A6NJB7 356 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 SDR42E2A6NKP2 422 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 EFCAB8A8MWE9 144 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 CFAP99D6REC4 459 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 KIF2AO00139 706 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 BANF1O75531 89 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 TRIM16O95361 564 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 GP1BAP07359 652 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 RALBP11234 206 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 ATP1B2P14415 290 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 ARNTP27540 789 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 CLCNKAP51800 687 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 ITGA8P53708 1063 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 CKAP4Q07065 602 aaKnown RBP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 PCGF5Q86SE9 256 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 LDB1Q86U70 411 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 HOOK3Q86VS8 718 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 MARCH9Q86YJ5 346 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 ARL14Q8N4G2 192 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 HEXDCQ8WVB3 486 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 NAT6Q93015 286 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 ZNF514Q96K75 400 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 SIGLEC10Q96LC7 697 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 PWWP2AQ96N64 755 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 SAMD15Q9P1V8 674 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 MARCH4Q9P2E8 410 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-226ENST00000553011 SNX24Q9Y343 169 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 RNF215Q9Y6U7 377 aa13.89□□□□□ -0.19
PTCH1-226ENST00000553011 FAM187AA6NFU0 413 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 OPA1O60313 960 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 SEC31AO94979 1220 aaKnown RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 VAPBO95292 243 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 TUBB4AP04350 444 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 RPL21P46778 160 aaKnown RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 INSM1Q01101 510 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 MORF4L2Q15014 288 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 SEPT7Q16181 437 aaKnown RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 WHAMMP3Q1A5X7 153 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 BCL7AQ4VC05 210 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 MSS51Q4VC12 460 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 FASTKD1Q53R41 847 aaKnown RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 HIBCHQ6NVY1 386 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 IYDQ6PHW0 289 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 FAM83HQ6ZRV2 1179 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 AMZ2Q86W34 360 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 CLDN19Q8N6F1 224 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 MAPK15Q8TD08 544 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 SLC37A2Q8TED4 501 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 ZNF669Q96BR6 464 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 SNF8Q96H20 258 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 FCRL3Q96P31 734 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 CCDC3Q9BQI4 270 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 SCNM1Q9BWG6 230 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 CATSPERZQ9NTU4 200 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 SCHIP1Q9P0W5 487 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-226ENST00000553011 LRIT1Q9P2V4 623 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 FAM8A1Q9UBU6 413 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 KLK13Q9UKR3 277 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 MAD1L1Q9Y6D9 718 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 PRSS21Q9Y6M0 314 aa13.88□□□□□ -0.19
PTCH1-226ENST00000553011 FAM237BA0A1B0GVD1 139 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 FAM149AA5PLN7 773 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 PDZK1P1A8MUH7 402 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 GOLGA8KD6RF30 607 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 GOLGA8TH3BQL2 631 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 TP73O15350 636 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 CD3EAPO15446 510 aaKnown RBP13.87□□□□□ -0.19
PTCH1-226ENST00000553011 OR1I1O60431 355 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 CDK4P11802 303 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 F3P13726 295 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 GLB1P16278 677 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 VCLP18206 1134 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 IDSP22304 550 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 RPL10P27635 214 aaKnown RBP13.87□□□□□ -0.19
PTCH1-226ENST00000553011 PRLHRP49683 370 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 DRG2P55039 364 aaKnown RBP13.87□□□□□ -0.19
PTCH1-226ENST00000553011 E2F1Q01094 437 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 DHX9Q08211 1270 aaKnown RBP13.87□□□□□ -0.19
PTCH1-226ENST00000553011 NFE2L1Q14494 772 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 ITIH4Q14624 930 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 BBS9Q3SYG4 887 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 ANKRD20A4Q4UJ75 823 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 HES3Q5TGS1 186 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 ARMC3Q5W041 872 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 KIAA0930Q6ICG6 404 aaPredicted RBP13.87□□□□□ -0.19
PTCH1-226ENST00000553011 MAATS1Q7Z4T9 603 aa13.87□□□□□ -0.19
PTCH1-226ENST00000553011 SFRP1Q8N474 314 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms