RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SPO11Q9Y5K1 396 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 A0A087X1B8 175 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 A0A1W2PP18 115 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NCF1BA6NI72 391 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NCF1CA8MVU1 366 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 H0YAE9 185 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SLC1A7O00341 560 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CXCL11O14625 94 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 AZIN1O14977 448 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TREHO43280 583 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TBX1O43435 398 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NDUFS2O75306 463 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DAB1O75553 588 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CRCPO75575 148 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 WISP3O95389 354 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NCF1P14598 390 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ACVR2AP27037 513 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CD40LGP29965 261 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CA8P35219 290 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 POU4F1Q01851 419 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 OCA2Q04671 838 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 RAPSNQ13702 412 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TUBA3CQ13748 450 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 RCAN2Q14206 197 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SEMA3AQ14563 771 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 KYAT1Q16773 422 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 HIST2H2ACQ16777 129 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FAM214AQ32MH5 1076 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GNASQ5JWF2 1037 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FAM209AQ5JX71 171 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ARTNQ5T4W7 220 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 AGAP9Q5VTM2 703 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SULT1C3Q6IMI6 304 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC81Q6ZN84 652 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GALNT13Q8IUC8 556 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 LYSMD2Q8IV50 215 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ARHGAP12Q8IWW6 846 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 C8orf59Q8N0T1 100 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CRYBG2Q8N1P7 616 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CELF2-AS1Q8N7Q2 184 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 OR7A2PQ8NGA2 310 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DYNC2LI1Q8TCX1 351 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TRIB2Q92519 343 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ISG20Q96AZ6 181 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FEM1AQ9BSK4 669 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NACA2Q9H009 215 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GDAP2Q9NXN4 497 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 VNN3Q9NY84 501 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GMIPQ9P107 970 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SEPT3Q9UH03 358 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 HTTP42858 3142 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PAPPA2Q9BXP8 1791 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FNDC1Q4ZHG4 1894 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FAM92AA1XBS5 289 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GOLGA8CPA6NN73 597 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ERI2A8K979 691 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 A8MV72 311 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 G3V2T6 193 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GABARAPO95166 117 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PAPSS2O95340 614 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 STAU1O95793 577 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 B3GALT4O96024 378 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PIRTP0C851 137 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 C7P10643 843 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ALDH7A1P49419 539 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NRG1Q02297 640 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 MVKQ03426 396 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GBX1Q14549 363 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 RPS6KA2Q15349 733 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PRSS36Q5K4E3 855 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 COLEC12Q5KU26 742 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 KANK2Q63ZY3 851 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SPESP1Q6UW49 350 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DLEU7Q6UYE1 221 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 RANBP10Q6VN20 620 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ATPAF2Q8N5M1 289 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ZMIZ2Q8NF64 920 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PNPT1Q8TCS8 783 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PROKR1Q8TCW9 393 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 L3HYPDHQ96EM0 354 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 VMP1Q96GC9 406 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SLC2A13Q96QE2 648 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF300Q96RE9 604 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NODALQ96S42 347 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CGREF1Q99674 301 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 COLEC11Q9BWP8 271 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TRIM15Q9C019 465 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ZBTB20Q9HC78 741 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 HPS4Q9NQG7 708 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GALPQ9UBC7 116 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TRHDEQ9UKU6 1024 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ATP11BQ9Y2G3 1177 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PPP2R3BQ9Y5P8 575 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NYNRINQ9P2P1 1898 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 MKI67P46013 3256 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 A0A0U1RQS6 177 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 BBIP1A8MTZ0 92 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PRMT5O14744 637 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CACNG3O60359 315 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms