RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 NRROSQ86YC3 692 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 CHERPQ8IWX8 916 aaKnown RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 PELI3Q8N2H9 469 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 AVL9Q8NBF6 648 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 CLEC18CQ8NCF0 446 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 MAGEC3Q8TD91 643 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 NSMCE1Q8WV22 266 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 ASB5Q8WWX0 329 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 RHBDF1Q96CC6 855 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GCNAQ96QF7 691 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 PAFAH2Q99487 392 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 TRMT1Q9NXH9 659 aaKnown RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 DNAJB4Q9UDY4 337 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 STK39Q9UEW8 545 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 FAM169AQ9Y6X4 670 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 NOS1P29475 1434 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 RIMS2Q9UQ26 1411 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 CCDC18Q5T9S5 1454 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 LNP1A1A4G5 178 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 CD8B2A6NJW9 211 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 SOCS6O14544 535 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 KCNN4O15554 427 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 SERPINI2O75830 405 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 SRCP12931 536 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 UGT1A1P22309 533 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 SEC61BP60468 96 aaKnown RBP4.85□□□□□ -1.63
LIMA1-205ENST00000550592 TRAF2Q12933 501 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 GRAPQ13588 217 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 DLG2Q15700 870 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 ZNF280DQ6N043 979 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 PDXDC1Q6P996 788 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 MINDY1Q8N5J2 469 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 PCDH20Q8N6Y1 951 aaKnown RBP4.85□□□□□ -1.63
LIMA1-205ENST00000550592 CCDC191Q8NCU4 936 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 FAM216AQ8WUB2 273 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 PTPMT1Q8WUK0 201 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-205ENST00000550592 WASF1Q92558 559 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 TAAR8Q969N4 342 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 ORAI1Q96D31 301 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 TMCO6Q96DC7 493 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 CEP295NLQ96MC4 621 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 CAMK1GQ96NX5 476 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 FCRL4Q96PJ5 515 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 ABHD1Q96SE0 405 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 APOL6Q9BWW8 343 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 DENND2DQ9H6A0 471 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-205ENST00000550592 PCDH9Q9HC56 1237 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 SLC35C2Q9NQQ7 365 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 NFKBIL1Q9UBC1 381 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-205ENST00000550592 DBNLQ9UJU6 430 aaKnown RBP4.85□□□□□ -1.63
LIMA1-205ENST00000550592 ABCC5O15440 1437 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 ADAMTS13Q76LX8 1427 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 EHBP1L1Q8N3D4 1523 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 TMEM131LA2VDJ0 1609 aa4.85□□□□□ -1.63
LIMA1-205ENST00000550592 PDE4DIPQ5VU43 2346 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 TRPM2O94759 1503 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 ZFYVE9O95405 1425 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 PTPRUQ92729 1446 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 LOC102723996A0A087X1L8 192 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 IGLV5-52A0A0A0MRZ9 124 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 hDV102S1A0JD36 115 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 TMEM8BA6NDV4 472 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 EIF4E1BA6NMX2 242 aaKnown RBP4.84□□□□□ -1.63
LIMA1-205ENST00000550592 TPOP07202 933 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 IGHV4-30-4P0DP06 118 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 CDK4P11802 303 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 PRLRP16471 622 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 BNC1Q01954 994 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 CRYZQ08257 329 aaKnown RBP4.84□□□□□ -1.63
LIMA1-205ENST00000550592 TRAF3Q13114 568 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 RASA2Q15283 850 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 CTF1Q16619 201 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 PAPPA-AS1Q5QFB9 102 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 CLIP4Q8N3C7 705 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 POMGNT2Q8NAT1 580 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 KCTD6Q8NC69 237 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 APPL2Q8NEU8 664 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 ZNF622Q969S3 477 aaKnown RBP eCLIP4.84□□□□□ -1.63
LIMA1-205ENST00000550592 VOPP1Q96AW1 172 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 KLHL4Q9C0H6 718 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 CPSF2Q9P2I0 782 aaKnown RBP4.84□□□□□ -1.63
LIMA1-205ENST00000550592 MYO6Q9UM54 1294 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 PCDHA7Q9UN72 937 aa4.84□□□□□ -1.63
LIMA1-205ENST00000550592 TMEM184BQ9Y519 407 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-205ENST00000550592 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.84□□□□□ -1.63
LIMA1-205ENST00000550592 CASZ1Q86V15 1759 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 hCG_1809904A0A1W2PP81 198 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 A0A1W2PPE2 198 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 A0A1W2PR64 198 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 FAM90A26D6RGX4 464 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 UBE2CO00762 179 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 ZNF500O60304 480 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-205ENST00000550592 DKC1O60832 514 aaKnown RBP eCLIP4.83□□□□□ -1.64
LIMA1-205ENST00000550592 KCNJ13O60928 360 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 KCNK5O95279 499 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 GH2P01242 217 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 SSTR2P30874 369 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 CLCNKAP51800 687 aa4.83□□□□□ -1.64
LIMA1-205ENST00000550592 AIMP1Q12904 312 aaKnown RBP4.83□□□□□ -1.64
LIMA1-205ENST00000550592 PRPF4BQ13523 1007 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms