RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 BLMHQ13867 455 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 TJAP1Q5JTD0 557 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 SPATA19Q7Z5L4 167 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 DDHD1Q8NEL9 900 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 ADCY4Q8NFM4 1077 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 RORBQ92753 470 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 REPS1Q96D71 796 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 SMG9Q9H0W8 520 aaKnown RBP16.11■□□□□ 0.17
CUX1-213ENST00000549414 ALG2Q9H553 416 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 NCKAP1Q9Y2A7 1128 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 SMCHD1A6NHR9 2005 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 SCAMP1O15126 338 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 CYP7B1O75881 506 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 PPP2R1BP30154 601 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 PIK3R6Q5UE93 754 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 EBPLQ9BY08 206 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 BCORQ6W2J9 1755 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 LTBP4Q8N2S1 1624 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 ANKRD66B4E2M5 251 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 ABLIM1O14639 778 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 GDF5P43026 501 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 SLC5A9Q2M3M2 681 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 PPP1R16AQ96I34 528 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 MRGPRX2Q96LB1 330 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 OSBPL11Q9BXB4 747 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 DOCK2Q92608 1830 aa16.11■□□□□ 0.17
CUX1-213ENST00000549414 ILVBLA1L0T0 632 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 MAFKO60675 156 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 USP46P62068 366 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 CEP97Q8IW35 865 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 WDR48Q8TAF3 677 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 SH3RF2Q8TEC5 729 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 CLP1Q92989 425 aaKnown RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 CCDC3Q9BQI4 270 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 RHBGQ9H310 441 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.1■□□□□ 0.17
CUX1-213ENST00000549414 DDX28Q9NUL7 540 aaKnown RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 FADS3Q9Y5Q0 445 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 BRWD1Q9NSI6 2320 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 GALTP07902 379 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 CCL5P13501 91 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 PRDX6P30041 224 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 CREMQ03060 361 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 TRIM16LQ309B1 348 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 EPGNQ6UW88 154 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 EEF1AKMT1Q8WVE0 214 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 ARMC7Q9H6L4 198 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 DNAJC11Q9NVH1 559 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 NUDT4Q9NZJ9 180 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 SELENONQ9NZV5 590 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 DEC1Q9P2X7 70 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 PRKAG3Q9UGI9 489 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 H3BM21 787 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 CLDN7O95471 211 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 MTHFD1P11586 935 aaKnown RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 SERINC3Q13530 473 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 FAM174BQ3ZCQ3 159 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 TMEM135Q86UB9 458 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 OFCC1Q8IZS5 231 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 ZNF296Q8WUU4 475 aaPredicted RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 SLC7A6OSQ96CW6 309 aaPredicted RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 DTNBP1Q96EV8 351 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 INTS10Q9NVR2 710 aaKnown RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 SAMHD1Q9Y3Z3 626 aaKnown RBP16.1■□□□□ 0.17
CUX1-213ENST00000549414 TUBGCP6Q96RT7 1819 aa16.1■□□□□ 0.17
CUX1-213ENST00000549414 E7ENX8 843 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 MATN2O00339 956 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 ZBTB11O95625 1053 aaPredicted RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 AOC1P19801 751 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 NR1H2P55055 460 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 CHIT1Q13231 466 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 PPP1R3AQ16821 1122 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 ZMIZ2Q8NF64 920 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 SGK2Q9HBY8 427 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 KRT84Q9NSB2 600 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 LAMB1P07942 1786 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 NRAPQ86VF7 1730 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 ERAL1O75616 437 aaKnown RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 CLDN9O95484 217 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 ATAT1Q5SQI0 421 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 ABRAXAS1Q6UWZ7 409 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 OR10A6Q8NH74 314 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 NELL1Q92832 810 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 TMEM248Q9NWD8 314 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 MARCH4Q9P2E8 410 aaPredicted RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 ZNF510Q9Y2H8 683 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 F5P12259 2224 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 FFAR2O15552 330 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 KIR3DL1P43629 444 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 ARSDP51689 593 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 PPIGQ13427 754 aaKnown RBP eCLIP16.09■□□□□ 0.179e-7■■■□□ 18.1
CUX1-213ENST00000549414 ATP1A4Q13733 1029 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 RTP2Q5QGT7 225 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 TTC23Q5W5X9 447 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 C17orf99Q6UX52 265 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 C2orf15Q8WU43 125 aaKnown RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 TMEM174Q8WUU8 243 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 REXO5Q96IC2 774 aaKnown RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 APOL4Q9BPW4 351 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 MTMR10Q9NXD2 777 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms