RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TOX2Q96NM4 488 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 GBP5Q96PP8 586 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 TNKS2Q9H2K2 1166 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ASB8Q9H765 288 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 PIDD1Q9HB75 910 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 IL26Q9NPH9 171 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CMTM6Q9NX76 183 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 PCDH10Q9P2E7 1040 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 PRSS21Q9Y6M0 314 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ASPDHA6ND91 283 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 GIPC1O14908 333 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ZNF26P17031 533 aaPredicted RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 SLC6A2P23975 617 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 HNF1BP35680 557 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 UFM1P61960 85 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 TPGS1Q6ZTW0 290 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ST13P4Q8IZP2 240 aaPredicted RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CLDN19Q8N6F1 224 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 FAM110BQ8TC76 370 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 VPS33AQ96AX1 596 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 TRAPPC9Q96Q05 1148 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 C1orf50Q9BV19 199 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 TRIM8Q9BZR9 551 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CLPBQ9H078 707 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 NOL11Q9H8H0 719 aaKnown RBP18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 CFAP97Q9P2B7 532 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 ST14Q9Y5Y6 855 aa18.3■□□□□ 0.52
PRPF40B-208ENST00000548436 A8MX80 341 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 CKMP06732 381 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 ZNF7P17097 686 aaPredicted RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 LAG3P18627 525 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 UGT1A6P19224 532 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 UGT1A1P22309 533 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 UGT1A4P22310 534 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 CD70P32970 193 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 UGT1A3P35503 534 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 UGT1A5P35504 534 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 PEX19P40855 299 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 GRIA2P42262 883 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 GRIA3P42263 894 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 MRPL19P49406 292 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 NFATC2Q13469 925 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 RCAN2Q14206 197 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 C6orf52Q5T4I8 152 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 PRMT9Q6P2P2 845 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 Q6ZSR9 355 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 FRA10AC1Q70Z53 315 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 SNX20Q7Z614 316 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 ZSWIM9Q86XI8 627 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 ACDQ96AP0 544 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 C17orf80Q9BSJ5 609 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 BEGAINQ9BUH8 593 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 BRINP2Q9C0B6 783 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 LSM7Q9UK45 103 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 ZFC3H1O60293 1989 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 A0A1W2PP18 115 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 ZNF839A8K0R7 811 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 AP1G1O43747 822 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 LILRB3O75022 631 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 HSPA8P11142 646 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 BPIP17213 487 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 RPS3P23396 243 aaKnown RBP eCLIP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 CCNHP51946 323 aaPredicted RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 GK3PQ14409 553 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 PCBP2Q15366 365 aaKnown RBP eCLIP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 COQ5Q5HYK3 327 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 DGKKQ5KSL6 1271 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 HMBOX1Q6NT76 420 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 HTR3DQ70Z44 454 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 ADAMTSL2Q86TH1 951 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 OR2T34Q8NGX1 318 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 OR2T3Q8NH03 318 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 PBXIP1Q96AQ6 731 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 EME1Q96AY2 570 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 UHRF1Q96T88 793 aaPredicted RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 FAM192AQ9GZU8 254 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 Q9H521 79 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 GID8Q9NWU2 228 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 SAGE1Q9NXZ1 904 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 CNOT11Q9UKZ1 510 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 INTS6Q9UL03 887 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 CNOT6Q9ULM6 557 aaKnown RBP18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 PLXNB3Q9ULL4 1909 aa18.29■□□□□ 0.52
PRPF40B-208ENST00000548436 OR7A17O14581 309 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 HSD17B1P14061 328 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 GJA1P17302 382 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 ERVK-8P63133 956 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 IRX1P78414 480 aaPredicted RBP18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 GRIK2Q13002 908 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 PAGE3Q5JUK9 113 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 C6orf136Q5SQH8 315 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 GOLGA7Q7Z5G4 137 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 TMC8Q8IU68 726 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 RBFAQ8N0V3 343 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 PAF1Q8N7H5 531 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 DNAJC5GQ8N7S2 189 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 TSPEARQ8WU66 669 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 CANT1Q8WVQ1 401 aa18.28■□□□□ 0.52
PRPF40B-208ENST00000548436 MRPS31Q92665 395 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms