RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MUC3AQ02505 3323 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCDC154A6NI56 674 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MSCO60682 206 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ASS1P00966 412 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MPOP05164 745 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CHRM5P08912 532 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ERCC2P18074 760 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 AZGP1P25311 298 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCND3P30281 292 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 COPZ1P61923 177 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCNIQ14094 377 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 GRM3Q14832 879 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 DCAF4L1Q3SXM0 396 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ZRANB3Q5FWF4 1079 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SPANXN2Q5MJ10 180 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NEPROQ6NW34 567 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MPZL3Q6UWV2 235 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CENPLQ8N0S6 344 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CENPSQ8N2Z9 138 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ARFGAP1Q8N6T3 406 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PSD4Q8NDX1 1056 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 OR9Q1Q8NGQ5 310 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ACTRT2Q8TDY3 377 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 HASPINQ8TF76 798 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MTFMTQ96DP5 389 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ZHX1-C8orf76Q96EF9 292 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FBXL20Q96IG2 436 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 RPL10LQ96L21 214 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MFSD14AQ96MC6 490 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCDC28BQ9BUN5 200 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SSU72Q9NP77 194 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 EBF1Q9UH73 591 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 BARX2Q9UMQ3 279 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 OAZ3Q9UMX2 235 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 BTBD3Q9Y2F9 522 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NUMA1Q14980 2115 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PNMA8CA0A1B0GUJ8 204 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 A8MU76 341 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FAM229AH3BQW9 127 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 K7EPI3 171 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TNPO2O14787 897 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CCNKO75909 580 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MYO1DO94832 1006 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SLITRK5O94991 958 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FTH1P02794 183 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ADORA2AP29274 412 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 GRK3P35626 688 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 GGT5P36269 586 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 RABGGTBP53611 331 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MAXP61244 160 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PIGFQ07326 219 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 DHCR24Q15392 516 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 LIPMQ5VYY2 423 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 RNF219Q5W0B1 726 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 GCNT7Q6ZNI0 430 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SH2D5Q6ZV89 423 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 METTL23Q86XA0 190 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ERI1Q8IV48 349 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PTGR2Q8N8N7 351 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SMYD1Q8NB12 490 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF540Q8NDQ6 660 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 JPH3Q8WXH2 748 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SLCO2A1Q92959 643 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 USP7Q93009 1102 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TPD52L3Q96J77 140 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FEM1AQ9BSK4 669 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 NUAK2Q9H093 628 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TRPV5Q9NQA5 729 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TRMT13Q9NUP7 481 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 GIMAP2Q9UG22 337 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ARID1BQ8NFD5 2236 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TSC2P49815 1807 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 A0A0J9YYE9 177 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 H0Y8X5 98 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 H3BMM5 538 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FBP2O00757 339 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 NOBOXO60393 691 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 WBP4O75554 376 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 RNASEH2AO75792 299 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MED26O95402 600 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CPSF4O95639 269 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 NTRK1P04629 796 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CDK4P11802 303 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PTPN1P18031 435 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 BMP8BP34820 402 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 HALP42357 657 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PIK3CGP48736 1102 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TKTL1P51854 596 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MPP1Q00013 466 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SLC6A3Q01959 620 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TWF1Q12792 350 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CDH17Q12864 832 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ZCCHC8Q6NZY4 707 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 C4orf22Q6V702 233 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 NECAB2Q7Z6G3 386 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF410Q86VK4 478 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 DENND6AQ8IWF6 608 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 KIAA0319LQ8IZA0 1049 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PGAM4Q8N0Y7 254 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 OR10Q1Q8NGQ4 319 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms