RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TREML2Q5T2D2 321 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 B3GNT9Q6UX72 402 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 DLK2Q6UY11 383 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ANKS3Q6ZW76 656 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 CARM1Q86X55 608 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ANKFN1Q8N957 763 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 GRPEL2Q8TAA5 225 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 PRKAB1Q9Y478 270 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 COL4A1P02462 1669 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 H3BN98 237 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 PSIP1O75475 530 aaKnown RBP14.11□□□□□ -0.15
LIMS1-215ENST00000544547 PTGS2P35354 604 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 APOFQ13790 326 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 RFTN1Q14699 578 aaPredicted RBP14.11□□□□□ -0.15
LIMS1-215ENST00000544547 TTLL9Q3SXZ7 439 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF404Q494X3 552 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 C9orf131Q5VYM1 1079 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 GPRIN3Q6ZVF9 776 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 TBC1D19Q8N5T2 526 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 LRRC20Q8TCA0 184 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 MYDGFQ969H8 173 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 FEM1CQ96JP0 617 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 OR52E6Q96RD3 313 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 CPA4Q9UI42 421 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 CLCA2Q9UQC9 943 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 C2orf81A6NN90 581 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 G3V2L1 256 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 H0YJX3 145 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SOAT1P35610 550 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ALDH3A2P51648 485 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 DGKQP52824 942 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 RAB25P57735 213 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 GNG2P59768 71 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 CYP4F8P98187 520 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ZSWIM7Q19AV6 140 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SOWAHAQ2M3V2 549 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 CELF3Q5SZQ8 465 aaKnown RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 MAP1SQ66K74 1059 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SLC2A6Q9UGQ3 507 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF222Q9UK12 451 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 VPS9D1Q9Y2B5 631 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 MAGED1Q9Y5V3 778 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 TOGARAM1Q9Y4F4 1720 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 LOC100130705A0A1B0GUX0 176 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 F5H5T6 163 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 RASAL1O95294 804 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 CD300CQ08708 224 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 C1DQ13901 141 aaKnown RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 DPYSL2Q16555 572 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SLC25A52Q3SY17 297 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 TIGD7Q6NT04 549 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 GPR153Q6NV75 609 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 STYXQ8WUJ0 223 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ATL1Q8WXF7 558 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 KLHL5Q96PQ7 755 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SLC7A5P2Q9GIP4 190 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 NAV1Q8NEY1 1877 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ELOVL7A1L3X0 281 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 H0YC42 278 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 RECQL4O94761 1208 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 DDNO94850 711 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 DIRAS1O95057 198 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SNX4O95219 450 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 DNAJB2P25686 324 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 OXTRP30559 389 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ALDH3B2P48448 385 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ANKRD46Q86W74 232 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 TMEM132CQ8N3T6 1108 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 CENPIQ92674 756 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF717Q9BY31 904 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-215ENST00000544547 DPEP3Q9H4B8 488 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 ELOVL6Q9H5J4 265 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 MINDY3Q9H8M7 445 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 GOLGA2P5Q9HBQ8 144 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 UCKL1Q9NWZ5 548 aa14.1□□□□□ -0.15
LIMS1-215ENST00000544547 SLC12A8A0AV02 714 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CSF2P04141 144 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 SLC15A1P46059 708 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ATP6V0D1P61421 351 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 NCF4Q15080 339 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CRY1Q16526 586 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 AP5B1Q2VPB7 878 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF549Q6P9A3 640 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF467Q7Z7K2 595 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 TTC29Q8NA56 475 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF486Q96H40 463 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 PAWRQ96IZ0 340 aaKnown RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 SLC45A3Q96JT2 553 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 GMIPQ9P107 970 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CDV3Q9UKY7 258 aaKnown RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 LRP5O75197 1615 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 FAM240BA0A1B0GVZ2 78 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CASTOR2A6NHX0 329 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 NME4O00746 187 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 KRT6AP02538 564 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 BMP2P12643 396 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 NDUFV1P49821 464 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 NUDT6P53370 316 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 FCGRTP55899 365 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 NFE2Q16621 373 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms