RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658		H3BM21	787 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TLR4	O00206	839 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	DLL1	O00548	723 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TNFRSF10C	O14798	259 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	KMO	O15229	486 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	RGS16	O15492	202 aa	Predicted RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GRID2	O43424	1007 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	NUAK1	O60285	661 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TCEA3	O75764	348 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	RASGRP1	O95267	797 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TNF	P01375	233 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	C1QA	P02745	245 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	CFI	P05156	583 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	SNRPA	P09012	282 aa	Known RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GSTM1	P09488	218 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	STMN1	P16949	149 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	ZNF8	P17098	575 aa	Predicted RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	CA5A	P35218	305 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	HOXD12	P35452	270 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GNPDA1	P46926	289 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	PRLHR	P49683	370 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	SERPINB8	P50452	374 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	BLK	P51451	505 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	POU4F1	Q01851	419 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GSTM4	Q03013	218 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	PPARD	Q03181	441 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	BMPR2	Q13873	1038 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	USP10	Q14694	798 aa	Known RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	LPAL2	Q16609	132 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	DUOXA1	Q1HG43	343 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	INSC	Q1MX18	579 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	PLA2G4E	Q3MJ16	856 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TTLL9	Q3SXZ7	439 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GON4L	Q3T8J9	2241 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	BCL7A	Q4VC05	210 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TAF1B	Q53T94	588 aa	Predicted RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	ZNF789	Q5FWF6	425 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	MROH9	Q5TGP6	573 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	HECTD2	Q5U5R9	776 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	RAPH1	Q70E73	1250 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	RD3	Q7Z3Z2	195 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	PARG	Q86W56	976 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TDRP	Q86YL5	185 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	PNPLA1	Q8N8W4	532 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	RASGEF1A	Q8N9B8	481 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	ELMO1	Q92556	727 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	SGF29	Q96ES7	293 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	LOXL4	Q96JB6	756 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	PKNOX2	Q96KN3	472 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	OR2M4	Q96R27	311 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	NDN	Q99608	321 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GPR22	Q99680	433 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	ORAI3	Q9BRQ5	295 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	AARSD1	Q9BTE6	412 aa	Known RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	P2RY12	Q9H244	342 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	CARS2	Q9HA77	564 aa	Known RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	CYP4F12	Q9HCS2	524 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	SARS2	Q9NP81	518 aa	Known RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	TRMT6	Q9UJA5	497 aa	Known RBP	11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	SLC39A10	Q9ULF5	831 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GPR34	Q9UPC5	381 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	GPSM3	Q9Y4H4	160 aa		11.73	□□□□□ -0.53
DDB1-223	ENST00000543658	SPTY2D1-AS1	A0A0U1RR47	76 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658		A0A1W2PR77	199 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	KLHL33	A6NCF5	533 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	TMEM202	A6NGA9	273 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	TRIM49D1	C9J1S8	452 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	KPNA5	O15131	536 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	VILL	O15195	856 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	OPA1	O60313	960 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	DNAJC6	O75061	913 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	APOA4	P06727	396 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	CTSE	P14091	401 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	ITGB6	P18564	788 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	POLD2	P49005	469 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	CSNK1E	P49674	416 aa	Known RBP	11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	SRP54	P61011	504 aa	Known RBP	11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	B4GALNT1	Q00973	533 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	ZNF844	Q08AG5	666 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	GPS2	Q13227	327 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	BOP1	Q14137	746 aa	Known RBP	11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	KHDC1	Q4VXA5	237 aa	Known RBP	11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	CTSL3P	Q5NE16	218 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	RBM20	Q5T481	1227 aa	Known RBP	11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	LAYN	Q6UX15	382 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	OTOA	Q7RTW8	1153 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	HID1	Q8IV36	788 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	IQCK	Q8N0W5	287 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	DCLK2	Q8N568	766 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	OXR1	Q8N573	874 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	CLDN19	Q8N6F1	224 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	KCNJ9	Q92806	393 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	TSNARE1	Q96NA8	513 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	CCM2	Q9BSQ5	444 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	DHRS4	Q9BTZ2	278 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	TMEM109	Q9BVC6	243 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	SLC13A1	Q9BZW2	595 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	SPATS2L	Q9NUQ6	558 aa	Known RBP	11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	DNAJC28	Q9NX36	388 aa		11.72	□□□□□ -0.53
DDB1-223	ENST00000543658	CTNNAL1	Q9UBT7	734 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms