RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RHOVQ96L33 236 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 COQ10AQ96MF6 247 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CFAP57Q96MR6 1250 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF641Q96N77 438 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF396Q96N95 335 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PLEKHG4BQ96PX9 1271 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 BARD1Q99728 777 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SMR3AQ99954 134 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SLC7A5P2Q9GIP4 190 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 RAB6CQ9H0N0 254 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 OSGEPL1Q9H4B0 414 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ATP13A3Q9H7F0 1226 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 UPF2Q9HAU5 1272 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 UBE2TQ9NPD8 197 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PLCB1Q9NQ66 1216 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 WASH6PQ9NQA3 447 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CCM2LQ9NUG4 571 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 OLAHQ9NV23 265 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ASNSD1Q9NWL6 643 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PPARGC1AQ9UBK2 798 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 B4GALT6Q9UBX8 382 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 TRIM10Q9UDY6 481 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PPT2Q9UMR5 302 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 BTRCQ9Y297 605 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SLC17A4Q9Y2C5 497 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SLC30A1Q9Y6M5 507 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ABCA2Q9BZC7 2435 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 RTTNQ86VV8 2226 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ANKHD1Q8IWZ3 2542 aaKnown RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 hCG_2014768A0A024R1R8 64 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 A0A1W2PQJ5 194 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TSPAN11A1L157 253 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 GOLGA6L3A6NEY3 463 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 J3KR12 359 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SMAD7O15105 426 aaKnown RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TOX3O15405 576 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CREB3O43889 395 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 KLHL41O60662 606 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SMNDC1O75940 238 aaKnown RBP eCLIP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 IPO13O94829 963 aaKnown RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 UNC5CO95185 931 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CLDN14O95500 239 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 F3P13726 295 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SLC2A4P14672 509 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 NELFEP18615 380 aaKnown RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SYT1P21579 422 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TNFAIP3P21580 790 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 KRT9P35527 623 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 GMPRP36959 345 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 RGRP47804 291 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 MAPKAPK2P49137 400 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SCNN1BP51168 640 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SMSP52788 366 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 GSDMDP57764 484 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PPP1CAP62136 330 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CSNK1G2P78368 415 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ACY1Q03154 408 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CETN1Q12798 172 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 FOXD4Q12950 439 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PAK1Q13153 545 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 LAMB3Q13751 1172 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF169Q14929 603 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 RABEP1Q15276 862 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CDSNQ15517 529 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CNGA3Q16281 694 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PTCHD3Q3KNS1 767 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PLA2G4EQ3MJ16 856 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SLC25A52Q3SY17 297 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 INO80DQ53TQ3 878 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 C2CD6Q53TS8 623 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 DCAF10Q5QP82 559 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ARTNQ5T4W7 220 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 ACBD5Q5T8D3 534 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 FAM102AQ5T9C2 384 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 MLIPQ5VWP3 458 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 IZUMO3Q5VZ72 239 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 AFMIDQ63HM1 303 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 XKRXQ6PP77 449 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 IGFL3Q6UXB1 125 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 RFLNAQ6ZTI6 216 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TMEM26Q6ZUK4 368 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SLC26A9Q7LBE3 791 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TMEM200AQ86VY9 491 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 PRIMA1Q86XR5 153 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CBARPQ8N350 705 aaPredicted RBP4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CATSPER1Q8NEC5 780 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 OR1N1Q8NGS0 311 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SPATA3Q8NHX4 192 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 NUDT8Q8WV74 236 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 CASKIN2Q8WXE0 1202 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 KLHL6Q8WZ60 621 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 RSC1A1Q92681 617 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 SCAMP4Q969E2 229 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TBC1D31Q96DN5 1066 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 C14orf79Q96F83 325 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 FER1L6-AS2Q96M78 137 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 KREMEN1Q96MU8 473 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 GBP5Q96PP8 586 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 TSG101Q99816 390 aa4.68□□□□□ -1.66
LIMS1-214ENST00000542845 WDR77Q9BQA1 342 aaPredicted RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms