RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 MATN4O95460 622 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 BMP1P13497 986 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 EEF1DP29692 281 aaKnown RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 CASP2P42575 452 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 NFYCQ13952 458 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 MRNIPQ6NTE8 343 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 MDGA1Q8NFP4 955 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 OR6K2Q8NGY2 324 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 ZNF461Q8TAF7 563 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 FNDC8Q8TC99 324 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 MAGEE2Q8TD90 523 aaPredicted RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 C2orf15Q8WU43 125 aaKnown RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 TMEM125Q96AQ2 219 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 ATOH8Q96SQ7 321 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 PIF1Q9H611 641 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 CWH43Q9H720 699 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 CXorf21Q9HAI6 301 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 USP22Q9UPT9 525 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 YIPF1Q9Y548 306 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 FADS3Q9Y5Q0 445 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 SUPT3HB4E1H0 165 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 INSIG1O15503 277 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 SUPT3HO75486 399 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 NDST3O95803 873 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 C1RP00736 705 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 MBL2P11226 248 aaPredicted RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 VARSP26640 1264 aaKnown RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 GSK3BP49841 420 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 CLCQ05315 142 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 TWF1Q12792 350 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 PAGE3Q5JUK9 113 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 TMTC4Q5T4D3 741 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 GPR107Q5VW38 600 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 ELMSAN1Q6PJG2 1045 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 CHST15Q7LFX5 561 aaPredicted RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 LYSMD3Q7Z3D4 306 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 SPRED1Q7Z699 444 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 ADAMTS16Q8TE57 1224 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 CDKN2AIPNLQ96HQ2 116 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 TMEM74Q96NL1 305 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 MGME1Q9BQP7 344 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 SLAMF8Q9P0V8 285 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 GPR45Q9Y5Y3 372 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 ASPDHA6ND91 283 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 GIPC1O14908 333 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 CLDN11O75508 207 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 CRCPO75575 148 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 IDO1P14902 403 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 MZF1P28698 734 aaPredicted RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 YAP1P46937 504 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 SMAD3P84022 425 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 LIPEQ05469 1076 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 PLCL1Q15111 1095 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 SCIMPQ6UWF3 145 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 MIPOL1Q8TD10 442 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 PSKH2Q96QS6 385 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TRIB3Q96RU7 358 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 KCTD14Q9BQ13 255 aaPredicted RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 PLGRKTQ9HBL7 147 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 IKZF3Q9UKT9 509 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TDRKHQ9Y2W6 561 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 OAS3Q9Y6K5 1087 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 A0A1W2PP18 115 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TCRBV5S2A0A599 114 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 NCF1BA6NI72 391 aaPredicted RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 NCF1CA8MVU1 366 aaPredicted RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 H0Y626 953 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 KDELR3O43731 214 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TBL1XO60907 577 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 SNAP29O95721 258 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 GPIP06744 558 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 NCF1P14598 390 aaPredicted RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 PRDX3P30048 256 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 RFC2P35250 354 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 RAB39AQ14964 217 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 ANKDD1AQ495B1 522 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 CYBRD1Q53TN4 286 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 ADGRF1Q5T601 910 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TXNDC8Q6A555 127 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 ABRAXAS1Q6UWZ7 409 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 DHRSXQ8N5I4 330 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 RHEBL1Q8TAI7 183 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TMEM169Q96HH4 297 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 CDK5RAP1Q96SZ6 601 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 SEPHS2Q99611 448 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 SMPD3Q9NY59 655 aaPredicted RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 AFF4Q9UHB7 1163 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 RNF112Q9ULX5 631 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 ATP11BQ9Y2G3 1177 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 FCF1Q9Y324 198 aaKnown RBP12.38□□□□□ -0.43
RNF4-222ENST00000541204 RAI2Q9Y5P3 530 aa12.38□□□□□ -0.43
RNF4-222ENST00000541204 TRIM64A6NGJ6 449 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 GOLGA8CPA6NN73 597 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 H3BMQ9 156 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 GNRH1P01148 92 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 CYBBP04839 570 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 KCNK10P57789 538 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 UFM1P61960 85 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 LCP2Q13094 533 aa12.37□□□□□ -0.43
RNF4-222ENST00000541204 ATXN7L2Q5T6C5 722 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms