RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ERMP1Q7Z2K6 904 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TSPAN33Q86UF1 283 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 OR2L2Q8NH16 312 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 REEP4Q9H6H4 257 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 WDCPQ9H6R7 721 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MTMR4Q9NYA4 1195 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 EVLQ9UI08 416 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 POU2F3Q9UKI9 436 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 PCDHA10Q9Y5I2 948 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 CPQQ9Y646 472 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 INO80Q9ULG1 1556 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 CD109Q6YHK3 1445 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 IGKV5-2P06315 115 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 BMP7P18075 431 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ACO1P21399 889 aaKnown RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 OR3A3P47888 321 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 BMXP51813 675 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SF3B4Q15427 424 aaKnown RBP eCLIP8.68□□□□□ -1.023e-8■■■■■ 36.3
YBX3-208ENST00000540447 CEP97Q8IW35 865 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ABI1Q8IZP0 508 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PSD4Q8NDX1 1056 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 UPF1Q92900 1129 aaKnown RBP eCLIP8.68□□□□□ -1.02
YBX3-208ENST00000540447 SLC35C1Q96A29 364 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PANX1Q96RD7 426 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 AIF1LQ9BQI0 150 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 WASH6PQ9NQA3 447 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 NECTIN3Q9NQS3 549 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TMEM45AQ9NWC5 275 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ERVK13-1Q9NX77 482 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 OPTCQ9UBM4 332 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 NUFIP1Q9UHK0 495 aaKnown RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 TBX20Q9UMR3 447 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PCDHB12Q9Y5F1 795 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SPIN1Q9Y657 262 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 SLC37A4O43826 429 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 KRT33AO76009 404 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 BDNFP23560 247 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 GUCA1AP43080 201 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 ELP2Q6IA86 826 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 INTS5Q6P9B9 1019 aaKnown RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 GHDCQ8N2G8 530 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SETD6Q8TBK2 473 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TRMOQ9BU70 441 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 AMBNQ9NP70 447 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 NIT2Q9NQR4 276 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ENAMQ9NRM1 1142 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 MGAT4BQ9UQ53 548 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PNPLA6Q8IY17 1366 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF705GA8MUZ8 300 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 SLC28A1O00337 649 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ALX3O95076 343 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PAHP00439 452 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 CHRNA1P02708 482 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ELK4P28324 431 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ACSM2AQ08AH3 577 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 Q3C1V9 767 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ACSM2BQ68CK6 577 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 RFPL4BQ6ZWI9 263 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 EEPD1Q7L9B9 569 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SCUBE3Q8IX30 993 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ALDH16A1Q8IZ83 802 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 MFSD8Q8NHS3 518 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ACOT12Q8WYK0 555 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TBCBQ99426 244 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TBL1YQ9BQ87 522 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 CBWD1Q9BRT8 395 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 IL22Q9GZX6 179 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SIAEQ9HAT2 523 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TRHDEQ9UKU6 1024 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 NCAPD2Q15021 1401 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 H3BMQ9 156 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF701M0R085 212 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 BCAS2O75934 225 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 CLIC3O95833 236 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 MBP02144 154 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PDGFAP04085 211 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 CTBP2P56545 445 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 NRG1Q02297 640 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 TAF13Q15543 124 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 RNASEH2BQ5TBB1 312 aaKnown RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 NPLOC4Q8TAT6 608 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SMARCD1Q96GM5 515 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 COG8Q96MW5 612 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF700Q9H0M5 742 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ABCG8Q9H221 673 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TMEM185BQ9H7F4 350 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SMURF1Q9HCE7 757 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 GLTPQ9NZD2 209 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 CD300AQ9UGN4 299 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 DNMT1P26358 1616 aaKnown RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 TMEM221A6NGB7 291 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF705FA8MVS1 300 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 IL18RAPO95256 599 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PAK4O96013 591 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF705DP0CH99 300 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF705BP0CI00 300 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 NCS1P62166 190 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SCARF1Q14162 830 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 FASTKD3Q14CZ7 662 aaKnown RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 IQCCQ4KMZ1 466 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms