RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CTNNB1P35222 781 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PTPN9P43378 593 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 RNASE12Q5GAN4 147 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 INTS5Q6P9B9 1019 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TMPRSS11BQ86T26 416 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TMEM199Q8N511 208 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TOP6BLQ8N6T0 577 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 METTL21AQ8WXB1 218 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CDCA5Q96FF9 252 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 DUSP16Q9BY84 665 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 C12orf4Q9NQ89 552 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TMPRSS4Q9NRS4 437 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GRIN2DO15399 1336 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PAPSS1O43252 624 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 SCELO95171 688 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ARF4P18085 180 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 MAGP20916 626 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PDHA2P29803 388 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CRHR1P34998 444 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ATXN1P54253 815 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 NRG3P56975 720 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 POU5F1Q01860 360 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ACAP2Q15057 778 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 THOC7Q6I9Y2 204 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TCEAL6Q6IPX3 200 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 LRRC55Q6ZSA7 311 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ADGRA1Q86SQ6 560 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 OR8H1Q8NGG4 311 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ACO2Q99798 780 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 MIOSQ9NXC5 875 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 RCOR3Q9P2K3 495 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CNOT6Q9ULM6 557 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 RAB26Q9ULW5 256 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 SPATA31A5Q5VU36 1347 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 SPATA31A7Q8IWB4 1347 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 MYH10P35580 1976 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PER2O15055 1255 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GSC2O15499 205 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PSMD10O75832 226 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GPIP06744 558 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TAL1P17542 331 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ITPKAP23677 461 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 MARCKSL1P49006 195 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 SEPHS1P49903 392 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 RPL7AP62424 266 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ADAM8P78325 824 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TARBP2Q15633 366 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CXorf57Q6NSI4 855 aaKnown RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GK5Q6ZS86 529 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CNTD1Q8N815 330 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 SPPL2BQ8TCT7 592 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GAL3ST3Q96A11 431 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 WDR55Q9H6Y2 383 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GMIPQ9P107 970 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 HES2Q9Y543 173 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3DA0A087WVF3 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3IA0A087WXS9 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3EA0A087X179 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3KA0A087X1G2 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3FA6NER0 549 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3LB9A6J9 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 MATN4O95460 622 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3HP0C7X1 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 BTN3A2P78410 334 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 C2orf80Q0P641 193 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TEX44Q53QW1 395 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3GQ6DHY5 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3CQ6IPX1 549 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CCSAPQ6IQ19 270 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GALNTL5Q7Z4T8 443 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GALNT5Q7Z7M9 940 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 P2RY8Q86VZ1 359 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TBC1D3Q8IZP1 549 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-209ENST00000537178 OR2L5Q8NG80 312 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CLHC1Q8NHS4 586 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PIGXQ8TBF5 258 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 TCF25Q9BQ70 676 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 MECRQ9BV79 373 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PCDH18Q9HCL0 1135 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 KCNMB3Q9NPA1 279 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF224Q9NZL3 707 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 PLLPQ9Y342 182 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 GLYATL1P3A0A0U1RQE8 302 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 CAPN8A6NHC0 703 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 ADAMTS3O15072 1205 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 TLX3O43711 291 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-209ENST00000537178 ORC5O43913 435 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 TM7SF2O76062 418 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 RPS9P46781 194 aaKnown RBP10.54□□□□□ -0.72
CLIP1-209ENST00000537178 LAPTM5Q13571 262 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 PRKD1Q15139 912 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-209ENST00000537178 SLC25A52Q3SY17 297 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 PLPPR4Q7Z2D5 763 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 GALNT7Q86SF2 657 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 RASGEF1AQ8N9B8 481 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 C12orf50Q8NA57 414 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-209ENST00000537178 SLC9A6Q92581 669 aa10.54□□□□□ -0.72
CLIP1-209ENST00000537178 FAM163AQ96GL9 167 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-209ENST00000537178 MYOCQ99972 504 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms