RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 MVB12BQ9H7P6 319 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 MINDY3Q9H8M7 445 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 MRPL44Q9H9J2 332 aaKnown RBP5.47□□□□□ -1.53
CD44-236ENST00000533222 SPACA1Q9HBV2 294 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 ANKHQ9HCJ1 492 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 ALG13Q9NP73 1137 aaKnown RBP5.47□□□□□ -1.53
CD44-236ENST00000533222 NSMCE4AQ9NXX6 385 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 MTMR4Q9NYA4 1195 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 GDE1Q9NZC3 331 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 MAT2BQ9NZL9 334 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 TUBD1Q9UJT1 453 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 SNX6Q9UNH7 406 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 RPH3AQ9Y2J0 694 aaPredicted RBP5.47□□□□□ -1.53
CD44-236ENST00000533222 GPR45Q9Y5Y3 372 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 RAD54BQ9Y620 910 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 CPQQ9Y646 472 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 ABCA9Q8IUA7 1624 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 EIF2AK4Q9P2K8 1649 aaKnown RBP5.47□□□□□ -1.53
CD44-236ENST00000533222 ASXL1Q8IXJ9 1541 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 PTCH1Q13635 1447 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 A0A1B0GUL6 1792 aa5.47□□□□□ -1.53
CD44-236ENST00000533222 KDM5AP29375 1690 aaKnown RBP5.47□□□□□ -1.53
CD44-236ENST00000533222 MYH7BA7E2Y1 1941 aa5.46□□□□□ -1.53
CD44-236ENST00000533222 TTC37Q6PGP7 1564 aa5.46□□□□□ -1.53
CD44-236ENST00000533222 PNMA6EA0A0J9YXQ4 647 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 SYNDIG1LA6NDD5 238 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 ZSCAN5CA6NGD5 496 aaPredicted RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 LRRC53A6NM62 1247 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PGRMC1O00264 195 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 DFNA5O60443 496 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CST8O60676 142 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 RNASEH1O60930 286 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 TBX10O75333 385 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 MED24O75448 989 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 TMEM63AO94886 807 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CYP21A2P08686 494 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 ZCCHC18P0CG32 403 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 SRGAP2BP0DMP2 458 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 MYBP10242 640 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PRG2P13727 222 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 APEHP13798 732 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 HSD3B1P14060 373 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 DARSP14868 501 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 CBR1P16152 277 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 GM2AP17900 193 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 HOXA5P20719 270 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 C5AR1P21730 350 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 KELP23276 732 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 IL12AP29459 219 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 ADSSP30520 456 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 BMPR1AP36894 532 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 WNT5AP41221 380 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PAFAH1B1P43034 410 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 ALDH1A3P47895 512 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CPA2P48052 419 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 LEPRP48357 1165 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 NDST1P52848 882 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CARD18P57730 90 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 ADAM8P78325 824 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 GCNT1Q02742 428 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 TEFQ10587 303 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CDH17Q12864 832 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 DLG1Q12959 904 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PICALMQ13492 652 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 RRP1BQ14684 758 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 PDK3Q15120 406 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 TTF1Q15361 905 aaPredicted RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 AASDHQ4L235 1098 aaPredicted RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 SLC45A4Q5BKX6 768 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 LIN9Q5TKA1 542 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CLEC6AQ6EIG7 209 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 MFSD5Q6N075 450 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CASC4Q6P4E1 433 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 KYAT3Q6YP21 454 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 USP30Q70CQ3 517 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 KDELC2Q7Z4H8 507 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 HORMAD1Q86X24 394 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 DGKHQ86XP1 1220 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 MCEMP1Q8IX19 187 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 NKAPQ8N5F7 415 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 FITM2Q8N6M3 262 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 GMCL1P1Q8NEA9 526 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 SPATA4Q8NEY3 305 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 OR6Q1Q8NGQ2 317 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 SH3RF3Q8TEJ3 882 aaPredicted RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 NRG4Q8WWG1 115 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PSPC1Q8WXF1 523 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 RFFLQ8WZ73 363 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PIK3R3Q92569 461 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CELF1Q92879 486 aaKnown RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.46□□□□□ -1.54
CD44-236ENST00000533222 MARC2Q969Z3 335 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 SLC7A6OSQ96CW6 309 aaPredicted RBP5.46□□□□□ -1.54
CD44-236ENST00000533222 C9orf72Q96LT7 481 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 PPP3R2Q96LZ3 170 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 SERPINB11Q96P15 392 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 LRRC37BQ96QE4 947 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 TXN2Q99757 166 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 KCNS3Q9BQ31 491 aa5.46□□□□□ -1.54
CD44-236ENST00000533222 CLSTN3Q9BQT9 956 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms