RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TMEM63A	O94886	807 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	JCHAIN	P01591	159 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	TUBB4A	P04350	444 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	RAB40AL	P0C0E4	278 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	MIP	P30301	263 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	SLC19A1	P41440	591 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	SPINT3	P49223	89 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	MAMLD1	Q13495	774 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	DPYSL2	Q16555	572 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ANKRD20A8P	Q5CZ79	823 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ZNF569	Q5MCW4	686 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	FKBP15	Q5T1M5	1219 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	AGAP9	Q5VTM2	703 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	PDPK2P	Q6A1A2	396 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ACAD10	Q6JQN1	1059 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	IRGC	Q6NXR0	463 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ABRAXAS1	Q6UWZ7	409 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	WASH2P	Q6VEQ5	465 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	FAM92B	Q6ZTR7	304 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	TP53INP2	Q8IXH6	220 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	RBMXL3	Q8N7X1	1067 aa	Known RBP	12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	FDCSP	Q8NFU4	85 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	CCHCR1	Q8TD31	782 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	LRFN5	Q96NI6	719 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	WDR24	Q96S15	920 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	AGPAT1	Q99943	283 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	TIMM29	Q9BSF4	260 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	NUDT9	Q9BW91	350 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	FAM83D	Q9H4H8	585 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	SLC40A1	Q9NP59	571 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	LATS2	Q9NRM7	1088 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ZNF624	Q9P2J8	865 aa	Predicted RBP	12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ATXN10	Q9UBB4	475 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	PCSK1N	Q9UHG2	260 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	CAPN11	Q9UMQ6	739 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	ENTPD4	Q9Y227	616 aa		12.21	□□□□□ -0.45
CAPN1-223	ENST00000533079	PRRC2C	Q9Y520	2896 aa	Known RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	C1orf232	A0A0U1RR37	186 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079		A0A1W2PQJ5	194 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	ANKUB1	A6NFN9	424 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	PDZK1P1	A8MUH7	402 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	EPHB6	O15197	1021 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	KMO	O15229	486 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	KIF1C	O43896	1103 aa	Known RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	KLHL41	O60662	606 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	SCRG1	O75711	98 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	CLDN7	O95471	211 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	CCDC172	P0C7W6	258 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZNF8	P17098	575 aa	Predicted RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	VAV2	P52735	878 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	DCDC1	P59894	354 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	GPR18	Q14330	331 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	VWA5B1	Q5TIE3	1220 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	PLEKHA7	Q6IQ23	1121 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	LRRTM4	Q86VH4	590 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	TMEM139	Q8IV31	216 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	SRRM1	Q8IYB3	904 aa	Known RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	CARF	Q8N187	725 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	ARFGAP1	Q8N6T3	406 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	CXorf40B	Q96DE9	158 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	SNRNP40	Q96DI7	357 aa	Known RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	RNF31	Q96EP0	1072 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	PCMTD1	Q96MG8	357 aa	Predicted RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	RUFY1	Q96T51	708 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	ZSCAN5A	Q9BUG6	496 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	TRIM39	Q9HCM9	518 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	NT5M	Q9NPB1	228 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	FGF21	Q9NSA1	209 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	SCHIP1	Q9P0W5	487 aa	Predicted RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	SNX7	Q9UNH6	387 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	CSMD2	Q7Z408	3487 aa		12.2	□□□□□ -0.46
CAPN1-223	ENST00000533079	IGHV5-51	A0A0C4DH38	117 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	HEATR9	A2RTY3	570 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TLCD2	A6NGC4	264 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	MFAP3L	O75121	409 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	KRT38	O76015	456 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	SLC25A14	O95258	325 aa	Predicted RBP	12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	GYPC	P04921	128 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	ALPP	P05187	535 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	KLK3	P07288	261 aa	Predicted RBP	12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	FOLR1	P15328	257 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	VCL	P18206	1134 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	PCK1	P35558	622 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	ARL4D	P49703	201 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	KLK7	P49862	253 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	ITGA1	P56199	1179 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	PER3	P56645	1201 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TUBB4B	P68371	445 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TUBB2A	Q13885	445 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TDRD12	Q587J7	1177 aa	Known RBP	12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TIGD7	Q6NT04	549 aa	Predicted RBP	12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	FAM199X	Q6PEV8	388 aa	Predicted RBP	12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TMTC1	Q8IUR5	882 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TMEM126B	Q8IUX1	230 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	FATE1	Q969F0	183 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	MARVELD3	Q96A59	401 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	CSPG4P5	Q96PW8	444 aa		12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	BAG1	Q99933	345 aa	Predicted RBP	12.19	□□□□□ -0.46
CAPN1-223	ENST00000533079	TUBB2B	Q9BVA1	445 aa		12.19	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms