RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TARSP26639 723 aaKnown RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 DGKEP52429 567 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 PRKAA2P54646 552 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 STX3Q13277 289 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 SGCGQ13326 291 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 UBXN2BQ14CS0 331 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 KHDC1Q4VXA5 237 aaKnown RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 ZNF648Q5T619 568 aaPredicted RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 OTOAQ7RTW8 1153 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 RHEBL1Q8TAI7 183 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 ZNF473Q8WTR7 871 aaKnown RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 SGF29Q96ES7 293 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 NELL2Q99435 816 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 LTB4R2Q9NPC1 389 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 SLCO1B3Q9NPD5 702 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 OXSMQ9NWU1 459 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 ZFR2Q9UPR6 939 aaKnown RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3DA0A087WVF3 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3IA0A087WXS9 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3EA0A087X179 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3KA0A087X1G2 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 KANSL1LA0AUZ9 987 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3FA6NER0 549 aaPredicted RBP20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3LB9A6J9 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 DLX3O60479 287 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 RNGTTO60942 597 aaKnown RBP20.74■□□□□ 0.91
VPS28-208ENST00000527797 ATG13O75143 517 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TSPAN12O95859 305 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 SERPINE1P05121 402 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3HP0C7X1 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 DGKAP23743 735 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 GRK2P25098 689 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 RGS4P49798 205 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 BST1Q10588 318 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TMEM115Q12893 351 aaPredicted RBP20.74■□□□□ 0.91
VPS28-208ENST00000527797 TTLL9Q3SXZ7 439 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3GQ6DHY5 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3CQ6IPX1 549 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 PNCKQ6P2M8 343 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 NEK5Q6P3R8 708 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 SYT13Q7L8C5 426 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 TBC1D3Q8IZP1 549 aaPredicted RBP20.74■□□□□ 0.91
VPS28-208ENST00000527797 FLCNQ8NFG4 579 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 STAG3L4Q8TBR4 150 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 KIAA1191Q96A73 305 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 PTERQ96BW5 349 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 PDLIM5Q96HC4 596 aaKnown RBP20.74■□□□□ 0.91
VPS28-208ENST00000527797 C1QTNF2Q9BXJ5 285 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 ZCCHC2Q9C0B9 1178 aaKnown RBP20.74■□□□□ 0.91
VPS28-208ENST00000527797 KDM4CQ9H3R0 1056 aa20.74■□□□□ 0.91
VPS28-208ENST00000527797 A0A1W2PQU0 124 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 CCDC189A1A4V9 331 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 PRR23AA6NEV1 266 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 H2AFYO75367 372 aaKnown RBP20.73■□□□□ 0.91
VPS28-208ENST00000527797 ATP5F1P24539 256 aaPredicted RBP20.73■□□□□ 0.91
VPS28-208ENST00000527797 ASPHQ12797 758 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 WSCD2Q2TBF2 565 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 ADAMTSL4Q6UY14 1074 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 ZCCHC23Q6ZST2 131 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 FAM124AQ86V42 546 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 RASGEF1AQ8N9B8 481 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 PLA2G15Q8NCC3 412 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 HMGB4Q8WW32 186 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 GRAMD1AQ96CP6 724 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 CCDC126Q96EE4 140 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 OSBPL6Q9BZF3 934 aa20.73■□□□□ 0.91
VPS28-208ENST00000527797 FAM170BA6NMN3 283 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 KPNA5O15131 536 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 FTH1P02794 183 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 PCCBP05166 539 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 MAP7D1Q3KQU3 841 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 TMEM259Q4ZIN3 620 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 LIPMQ5VYY2 423 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 HORMAD1Q86X24 394 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 UBALD2Q8IYN6 164 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 SIX5Q8N196 739 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 PGBD3Q8N328 593 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 HIC2Q96JB3 615 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 C1QTNF7Q9BXJ2 289 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 SLC17A9Q9BYT1 436 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 TRIM39Q9HCM9 518 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 MBD1Q9UIS9 605 aaPredicted RBP20.72■□□□□ 0.91
VPS28-208ENST00000527797 BPTFQ12830 3046 aa20.72■□□□□ 0.91
VPS28-208ENST00000527797 OR2AG2A6NM03 316 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 BTN3A1O00481 513 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 CDK14O94921 469 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 PAK4O96013 591 aaPredicted RBP20.71■□□□□ 0.91
VPS28-208ENST00000527797 CBSLP0DN79 551 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 CCR7P32248 378 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 CBSP35520 551 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 KCNC1P48547 511 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 TPMTP51580 245 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 FGL2Q14314 439 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 OR4D1Q15615 310 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 GKAP1Q5VSY0 366 aaPredicted RBP20.71■□□□□ 0.91
VPS28-208ENST00000527797 MYO1HQ8N1T3 1032 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 LENG8Q96PV6 779 aaPredicted RBP20.71■□□□□ 0.91
VPS28-208ENST00000527797 ELAC2Q9BQ52 826 aaKnown RBP20.71■□□□□ 0.91
VPS28-208ENST00000527797 EPHX3Q9H6B9 360 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 ITM2CQ9NQX7 267 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms