RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 COL20A1Q9P218 1284 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 TBX22Q9Y458 520 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 HRH3Q9Y5N1 445 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 KCPQ6ZWJ8 1503 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 EEF2KO00418 725 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 NCAM2O15394 837 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 CABYRO75952 493 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 POU1F1P28069 291 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 HNF1BP35680 557 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 KCNC1P48547 511 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 TPMTP51580 245 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 PRELPP51888 382 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FRG1Q14331 258 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 AANATQ16613 207 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SYT6Q5T7P8 510 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM171BQ6P995 826 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 MOXD1Q6UVY6 613 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 GALNT5Q7Z7M9 940 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM83AQ86UY5 434 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FSTL5Q8N475 847 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 KIAA1958Q8N8K9 716 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 NETO2Q8NC67 525 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 MBOAT4Q96T53 435 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 ACOX2Q99424 681 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 HOPXQ9BPY8 73 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 C1QTNF6Q9BXI9 259 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 RAVER2Q9HCJ3 691 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 NGRNQ9NPE2 291 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 INTS7Q9NVH2 962 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SCN3BQ9NY72 215 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 USE1Q9NZ43 259 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 XPR1Q9UBH6 696 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 MUTYHQ9UIF7 546 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 MID2Q9UJV3 735 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 PEX16Q9Y5Y5 336 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 ADAMTS7Q9UKP4 1686 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SNED1Q8TER0 1413 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 WWP2O00308 870 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CNTN5O94779 1100 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF37AP17032 561 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CA5AP35218 305 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 BRCC3P46736 316 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 PLK1P53350 603 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 BCAT1P54687 386 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 SCRN3Q0VDG4 424 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 RPS6KA2Q15349 733 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CCNJQ5T5M9 372 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CACHD1Q5VU97 1274 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF669Q96BR6 464 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 IL22Q9GZX6 179 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 IL20Q9NYY1 176 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ANKRD6Q9Y2G4 727 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 TPRKBQ9Y3C4 175 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 LYVE1Q9Y5Y7 322 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 UBR2Q8IWV8 1755 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 SPATA31C2B4DYI2 1134 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 PRSS44E7EML9 344 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CDK14O94921 469 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 LIPAP38571 399 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 MAGEA3P43357 314 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 OLIG2Q13516 323 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 RAPSNQ13702 412 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF460Q14592 562 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 HSDL1Q3SXM5 330 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ZBTB37Q5TC79 503 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF470Q6ECI4 717 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CLEC6AQ6EIG7 209 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 METTL23Q86XA0 190 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ROPN1LQ96C74 230 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 UROC1Q96N76 676 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 FOPNLQ96NB1 174 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 FRMD6Q96NE9 622 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM129BQ96TA1 746 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 RBBP8Q99708 897 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CPNE1Q99829 537 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CHCHD6Q9BRQ6 235 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 KMT5AQ9NQR1 393 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 NDUFAF1Q9Y375 327 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 TANC1Q9C0D5 1861 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 TNNC2P02585 160 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 MPOP05164 745 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 HSD17B1P14061 328 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CD19P15391 556 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 MAGEA11P43364 429 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 FCGRTP55899 365 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 CNTN2Q02246 1040 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 RGS1Q08116 209 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 TP53BP2Q13625 1128 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 LEXMQ3ZCV2 418 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 LAMTOR1Q6IAA8 161 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 FBXO11Q86XK2 927 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 NT5DC4Q86YG4 428 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 SLC30A2Q9BRI3 323 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 NAT9Q9BTE0 207 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 WDR18Q9BV38 432 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 MS4A7Q9GZW8 240 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 TNFRSF12AQ9NP84 129 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ACOT13Q9NPJ3 140 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF639Q9UID6 485 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms