RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 FAM172AQ8WUF8 416 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 FUBP1Q96AE4 644 aaKnown RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 RNF31Q96EP0 1072 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 PGAP3Q96FM1 320 aaPredicted RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 PDLIM2Q96JY6 352 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 C1orf74Q96LT6 269 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 HAPLN3Q96S86 360 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 PSMB7Q99436 277 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 AIFM2Q9BRQ8 373 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 SYT11Q9BT88 431 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.62□□□□□ -1.67
NUP54-206ENST00000508465 NUP58Q9BVL2 599 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 SELENOOQ9BVL4 669 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 GTPBP2Q9BX10 602 aaKnown RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 XPO4Q9C0E2 1151 aaKnown RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 NEUROG2Q9H2A3 272 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 KLK15Q9H2R5 256 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 C6orf106Q9H6K1 298 aaPredicted RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 VPS45Q9NRW7 570 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 KLHL11Q9NVR0 708 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 GPATCH2LQ9NWQ4 482 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 ARHGEF38Q9NXL2 777 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 RRN3Q9NYV6 651 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 AIPL1Q9NZN9 384 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 MYO1AQ9UBC5 1043 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 OR12D3Q9UGF7 316 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 SERGEFQ9UGK8 458 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 PCSK1NQ9UHG2 260 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 EVLQ9UI08 416 aaPredicted RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 VPS28Q9UK41 221 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 PILRBQ9UKJ0 227 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 STAP1Q9ULZ2 295 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 G3BP2Q9UN86 482 aaKnown RBP4.62□□□□□ -1.67
NUP54-206ENST00000508465 OR51B4Q9Y5P0 310 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 SLCO1B1Q9Y6L6 691 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 SPEGQ15772 3267 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 RALGAPA1Q6GYQ0 2036 aa4.62□□□□□ -1.67
NUP54-206ENST00000508465 FRYQ5TBA9 3013 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 KIAA1549LQ6ZVL6 1849 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 EDDM13A0A1B0GTR0 161 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 A0A1B0GVM2 712 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 TCRBV5S1A1TA0A578 114 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 MED19A0JLT2 244 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 CDX4O14627 284 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 NPC1O15118 1278 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 AP5Z1O43299 807 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CCP110O43303 1012 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 LRP3O75074 770 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 ZNF217O75362 1048 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CLDN11O75508 207 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 RNASEH2AO75792 299 aaKnown RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 MOCS3O95396 460 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 IL1BP01584 269 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CALB1P05937 261 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 RHOCP08134 193 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 SRPRAP08240 638 aaKnown RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 ELANEP08246 267 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CCDC172P0C7W6 258 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 OXTRP30559 389 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 OR1E1P30953 314 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 SDC4P31431 198 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 RDXP35241 583 aaKnown RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 PBX1P40424 430 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 PSMD8P48556 350 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CSNK1EP49674 416 aaKnown RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 PLK1P53350 603 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 GALCP54803 685 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CDH4P55283 916 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 TPM4P67936 248 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 ARHGAP8P85298 464 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 MAMLD1Q13495 774 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 HNRNPA1L2Q32P51 320 aaKnown RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 C5orf22Q49AR2 442 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 PRAMEF14Q5SWL7 426 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 SYCP2LQ5T4T6 812 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 DCAF12L1Q5VU92 463 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 LYSMD4Q5XG99 296 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 B3GNTL1Q67FW5 361 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 DCUN1D2Q6PH85 259 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 LAYNQ6UX15 382 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 MED25Q71SY5 747 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 DGLUCYQ7Z3D6 616 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 BNIPLQ7Z465 357 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 SLFN11Q7Z7L1 901 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 NXPE1Q8N323 547 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 HDDC3Q8N4P3 179 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 SH2D3CQ8N5H7 860 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 AADATQ8N5Z0 425 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 ARFGAP1Q8N6T3 406 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 Q8N9P0 234 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 ZNF610Q8N9Z0 462 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 ATP11CQ8NB49 1132 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CHTF18Q8WVB6 975 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 SNX19Q92543 992 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 CENPIQ92674 756 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 KLK6Q92876 244 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 ZNF419Q96HQ0 510 aaPredicted RBP4.61□□□□□ -1.67
NUP54-206ENST00000508465 MCEEQ96PE7 176 aa4.61□□□□□ -1.67
NUP54-206ENST00000508465 OMDQ99983 421 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms