RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	IGDCC3	Q8IVU1	814 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	RASGEF1A	Q8N9B8	481 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	GPR150	Q8NGU9	434 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	FBXO25	Q8TCJ0	367 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	DCUN1D1	Q96GG9	259 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ZNF514	Q96K75	400 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	OR2M4	Q96R27	311 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	COPS8	Q99627	209 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CATSPERZ	Q9NTU4	200 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ZDHHC18	Q9NUE0	388 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CDV3	Q9UKY7	258 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	GPR34	Q9UPC5	381 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	GPSM3	Q9Y4H4	160 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	KNTC1	P50748	2209 aa		11.75	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ESYT3	A0FGR9	886 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CFAP99	D6REC4	459 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	KMO	O15229	486 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	YY2	O15391	372 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	KCNJ13	O60928	360 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ANXA6	P08133	673 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TTPA	P49638	278 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CLCNKA	P51800	687 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	B4GALNT1	Q00973	533 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ILF3	Q12906	894 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CRYM	Q14894	314 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	LONRF1	Q17RB8	773 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	AARS2	Q5JTZ9	985 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	STEAP4	Q687X5	459 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	MRNIP	Q6NTE8	343 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	NEPRO	Q6NW34	567 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	NRROS	Q86YC3	692 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ZNF547	Q8IVP9	402 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	NAXD	Q8IW45	347 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	LRRN4CL	Q8ND94	238 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	OR4C6	Q8NH72	309 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SCG3	Q8WXD2	468 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TCF12	Q99081	682 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	WDR83	Q9BRX9	315 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TRIM56	Q9BRZ2	755 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TIMM29	Q9BSF4	260 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	DUSP23	Q9BVJ7	150 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	GSDMC	Q9BYG8	508 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	NLGN3	Q9NZ94	848 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ST14	Q9Y5Y6	855 aa		11.74	□□□□□ -0.53
PDLIM5-208	ENST00000504489	QSOX1	O00391	747 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SGTA	O43765	313 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SH3BP5	O60239	455 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CBFA2T3	O75081	653 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	AP2A2	O94973	939 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CELA2B	P08218	269 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ALPPL2	P10696	532 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ATP1B2	P14415	290 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	ZNF7	P17097	686 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CSRP1	P21291	193 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	NSG1	P42857	185 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CTSC	P53634	463 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TUBB4B	P68371	445 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CTBS	Q01459	385 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CUL1	Q13616	776 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	FRG1	Q14331	258 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SEMA3A	Q14563	771 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	FASTKD3	Q14CZ7	662 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	RSPO4	Q2I0M5	234 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TYSND1	Q2T9J0	566 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	BCL7A	Q4VC05	210 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TMEM220	Q6QAJ8	160 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CRTC3	Q6UUV7	619 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CHST15	Q7LFX5	561 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TAF8	Q7Z7C8	310 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	C11orf96	Q7Z7L8	435 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	TRAPPC5	Q8IUR0	188 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	LMNTD2	Q8IXW0	634 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	IFT20	Q8IY31	132 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	EID2	Q8N6I1	236 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	FAM181A	Q8N9Y4	354 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	FBXO36	Q8NEA4	188 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CCL4L1	Q8NHW4	92 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	BAHD1	Q8TBE0	780 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CALML6	Q8TD86	181 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	RHBDD1	Q8TEB9	315 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SETD7	Q8WTS6	366 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SGF29	Q96ES7	293 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	LINC00615	Q96LM1	132 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	RTKN	Q9BST9	563 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	PLAC1	Q9HBJ0	212 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	SAYSD1	Q9NPB0	183 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	PCOLCE2	Q9UKZ9	415 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	DOLK	Q9UPQ8	538 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	CHMP2B	Q9UQN3	213 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	BTBD3	Q9Y2F9	522 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	PRKAB1	Q9Y478	270 aa		11.73	□□□□□ -0.53
PDLIM5-208	ENST00000504489	PLEKHM1	Q9Y4G2	1056 aa		11.73	□□□□□ -0.53

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