RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TMEM198Q66K66 360 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 GLDNQ6ZMI3 551 aaPredicted RBP3.61□□□□□ -1.83
VPS41-213ENST00000485955 CLEC17AQ6ZS10 378 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 CPLX4Q7Z7G2 160 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 CCDC190Q86UF4 302 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 LONP2Q86WA8 852 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 CEP97Q8IW35 865 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 EXOC8Q8IYI6 725 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 RNF168Q8IYW5 571 aaPredicted RBP3.61□□□□□ -1.83
VPS41-213ENST00000485955 GCSAMQ8N6F7 178 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 PAF1Q8N7H5 531 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 RDM1Q8NG50 284 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 TMEM190Q8WZ59 177 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 SGCDQ92629 289 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 PSD2Q9BQI7 771 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 TMEM39BQ9GZU3 492 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 KCNK7Q9Y2U2 307 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 TMEM184BQ9Y519 407 aaPredicted RBP3.61□□□□□ -1.83
VPS41-213ENST00000485955 HHLA1C9JL84 531 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 NPHP1O15259 732 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 NDUFS3O75489 264 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 DAB1O75553 588 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 BMP10O95393 424 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 NR3C1P04150 777 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 CTSCP53634 463 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 SPOCK1Q08629 439 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 DUOXA1Q1HG43 343 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 MMS22LQ6ZRQ5 1243 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 ADAD2Q8NCV1 583 aaKnown RBP3.6□□□□□ -1.83
VPS41-213ENST00000485955 ZNF473Q8WTR7 871 aaKnown RBP3.6□□□□□ -1.83
VPS41-213ENST00000485955 UBE2Q2Q8WVN8 375 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 SLC26A6Q9BXS9 759 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 MOV10L1Q9BXT6 1211 aaKnown RBP3.6□□□□□ -1.83
VPS41-213ENST00000485955 SEMA6AQ9H2E6 1030 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 PELI2Q9HAT8 420 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 ZBTB20Q9HC78 741 aaPredicted RBP3.6□□□□□ -1.83
VPS41-213ENST00000485955 MBNL1Q9NR56 388 aaKnown RBP3.6□□□□□ -1.83
VPS41-213ENST00000485955 RRP7BPQ9NSQ0 103 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 SETD4Q9NVD3 440 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 DNAJB4Q9UDY4 337 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 TSPYL4Q9UJ04 414 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 C2CD2Q9Y426 696 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 CACNA1FO60840 1977 aa3.6□□□□□ -1.83
VPS41-213ENST00000485955 TEX13DA0A0J9YY54 714 aaPredicted RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 OR2M5A3KFT3 312 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 H0YIN7 160 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 TMEM189-UBE2V1I3L0A0 370 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 J3QR06 171 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 MAP2K7O14733 419 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 SMAD9O15198 467 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 SLC22A2O15244 555 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 TMEM63AO94886 807 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 GCNT3O95395 438 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 CAVIN2O95810 425 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 RARGP13631 454 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 ANXA7P20073 488 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 NFKBIAP25963 317 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 HOXC8P31273 242 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 PIK3CAP42336 1068 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 NR2C2P49116 596 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 HSD17B4P51659 736 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 PMP22Q01453 160 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 GOLGA8DPQ0D2H9 430 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 UBE2V1Q13404 147 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 PACS1Q6VY07 963 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 ZNF497Q6ZNH5 498 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 TMTC3Q6ZXV5 915 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 PTOV1Q86YD1 416 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 C1orf52Q8N6N3 182 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 ZNF485Q8NCK3 441 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 NAXEQ8NCW5 288 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 TDRD7Q8NHU6 1098 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 GSDMBQ8TAX9 411 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 TRPC4APQ8TEL6 797 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 ARHGEF2Q92974 986 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 LRR1Q96L50 414 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 PRMT6Q96LA8 375 aaPredicted RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 C1orf74Q96LT6 269 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 PPM1MQ96MI6 270 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 APOBEC3GQ9HC16 384 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 SLC38A7Q9NVC3 462 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 EHD2Q9NZN4 543 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 RCC2Q9P258 522 aaKnown RBP3.59□□□□□ -1.83
VPS41-213ENST00000485955 YIPF1Q9Y548 306 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 FLT1P17948 1338 aa3.59□□□□□ -1.83
VPS41-213ENST00000485955 LIPT2A6NK58 231 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 NR5A2O00482 541 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ZBTB43O43298 467 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 BUD23O43709 281 aaKnown RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 TBX6O95947 436 aaPredicted RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 HSPA1AP0DMV8 641 aaKnown RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 HSPA1BP0DMV9 641 aaKnown RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 MMP15P51511 669 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 DRG2P55039 364 aaKnown RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 MPP1Q00013 466 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 NDUFAF5Q5TEU4 345 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ZC2HC1BQ5TFG8 222 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 GKAP1Q5VSY0 366 aaPredicted RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 NCEH1Q6PIU2 408 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ZNF534Q76KX8 674 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms