RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RD3Q7Z3Z2 195 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 LRRTM4Q86VH4 590 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ZC3HC1Q86WB0 502 aaKnown RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 GALNT13Q8IUC8 556 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 TRAPPC5Q8IUR0 188 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 HID1Q8IV36 788 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 SUMF1Q8NBK3 374 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 OR2W6PQ8NHA6 318 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 SCARF2Q96GP6 870 aaPredicted RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 ATXN7L3BQ96GX2 97 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ZNF514Q96K75 400 aaPredicted RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 BIRC8Q96P09 236 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 RBBP8Q99708 897 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 P2RY12Q9H244 342 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 RHOJQ9H4E5 214 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 CARS2Q9HA77 564 aaKnown RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 FAM86C1Q9NVL1 165 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 PRKAB1Q9Y478 270 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 GPSM3Q9Y4H4 160 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 PCDHGA5Q9Y5G8 931 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ANKRD12Q6UB98 2062 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 IQCF5A8MTL0 148 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 H3BMM5 538 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 SCAMP1O15126 338 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 SGTAO43765 313 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 RASGRP1O95267 797 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 TRIM16O95361 564 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 ITGB6P18564 788 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 MPLP40238 635 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 PRLHRP49683 370 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 ILF2Q12905 390 aaKnown RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 BCL7AQ4VC05 210 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 PYCR3Q53H96 274 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 TRIM61Q5EBN2 209 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 CTSL3PQ5NE16 218 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 RBM20Q5T481 1227 aaKnown RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 PARGQ86W56 976 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 ZNF547Q8IVP9 402 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 BEND7Q8N7W2 519 aaPredicted RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 GPATCH11Q8N954 259 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 DCAKDQ8WVC6 231 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 PDXPQ96GD0 296 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 VPS39Q96JC1 886 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 ELMO2Q96JJ3 720 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 NDNQ99608 321 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 MCMBPQ9BTE3 642 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 AARSD1Q9BTE6 412 aaKnown RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 DHRS4Q9BTZ2 278 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 DNAJC28Q9NX36 388 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 FETUBQ9UGM5 382 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 SLC24A2Q9UI40 661 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 PNMA8BQ9ULN7 279 aaPredicted RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 CORO1CQ9ULV4 474 aaPredicted RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 SLC6A14Q9UN76 642 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 GPR34Q9UPC5 381 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 MTO1Q9Y2Z2 717 aaKnown RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 PCYT1BQ9Y5K3 369 aaPredicted RBP12.06□□□□□ -0.48
SDC1-206ENST00000482879 SNX11Q9Y5W9 270 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 COMMD10Q9Y6G5 202 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 WDFY4Q6ZS81 3184 aa12.06□□□□□ -0.48
SDC1-206ENST00000482879 BPTFQ12830 3046 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 GOLGA4Q13439 2230 aaKnown RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 FAM95CA0A1B0GW59 222 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 TLDC2A0PJX2 215 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 SMIM23A6NLE4 172 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 PATE3B3GLJ2 98 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 E5RI56 91 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 RASGRF2O14827 1237 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 KMOO15229 486 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 NIPSNAP2O75323 286 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 TCEA3O75764 348 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 POP7O75817 140 aaKnown RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 FTH1P02794 183 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 RETP07949 1114 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 ITGA2BP08514 1039 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 JUNDP17535 347 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 CHRM3P20309 590 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 SAT1P21673 171 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 GCAP28676 217 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 PBLDP30039 288 aaPredicted RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 NBL1P41271 181 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 CTSKP43235 329 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 SLCO1A2P46721 670 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 SERPINB9P50453 376 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 BLKP51451 505 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 HK3P52790 923 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 LIMK2P53671 638 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 BNC1Q01954 994 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 CASP8Q14790 479 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 CCDC6Q16204 474 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 PLA2G4EQ3MJ16 856 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 PRAMEF14Q5SWL7 426 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 MROH9Q5TGP6 573 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 HECTD2Q5U5R9 776 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 SLC23A3Q6PIS1 610 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 ADGRD1Q6QNK2 874 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 TAOK1Q7L7X3 1001 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 CHST15Q7LFX5 561 aaPredicted RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 PHACTR4Q8IZ21 702 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 IQCKQ8N0W5 287 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms