RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RYKP34925 604 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 GALK1P51570 392 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SUMO3P55854 103 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RPS8P62241 208 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC6A3Q01959 620 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CREB5Q02930 508 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 YWHAHQ04917 246 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SRSF11Q05519 484 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZP2Q05996 745 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DSC1Q08554 894 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 GPM6BQ13491 265 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PLS1Q14651 629 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 LTB4RQ15722 352 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 IQCCQ4KMZ1 466 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FLYWCH1Q4VC44 716 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 XKR4Q5GH76 650 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM171A1Q5VUB5 890 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ALS2CLQ60I27 953 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF385CQ66K41 422 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 KCTD11Q693B1 232 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLFN12LQ6IEE8 588 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 KLHL35Q6PF15 583 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FBXO46Q6PJ61 603 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF813Q6ZN06 617 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC16A12Q6ZSM3 486 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RRAGAQ7L523 313 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RALGPS2Q86X27 583 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM131BQ86XD5 332 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 HERC6Q8IVU3 1022 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZFPM1Q8IX07 1006 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RHOT1Q8IXI2 618 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF781Q8N8C0 355 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MRPL43Q8N983 215 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MINDY2Q8NBR6 621 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 BBS1Q8NFJ9 593 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 HTR3CQ8WXA8 447 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CPA5Q8WXQ8 436 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MUL1Q969V5 352 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 KIAA1143Q96AT1 154 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ARHGEF26Q96DR7 871 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PDLIM5Q96HC4 596 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TRNT1Q96Q11 434 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 EFHD1Q9BUP0 239 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TIPINQ9BVW5 301 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 APOL6Q9BWW8 343 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 IMPG2Q9BZV3 1241 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 IKZF4Q9H2S9 585 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 KCNK12Q9HB15 430 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CYP3A43Q9HB55 503 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 C20orf96Q9NUD7 363 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 LMBRD1Q9NUN5 540 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 GIN1Q9NXP7 522 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TMOD2Q9NZR1 351 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DLGAP2Q9P1A6 1054 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 NYAP2Q9P242 653 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PCDHA6Q9UN73 950 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 COA3Q9Y2R0 106 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MRPS7Q9Y2R9 242 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 X6R8D5 127 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RNF103-CHMP3A0A140T963 221 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 C5orf51A6NDU8 294 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 OR6C70A6NIJ9 312 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 F8W036 122 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ACOT7O00154 380 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RNF103O00237 685 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 KIAA0355O15063 1070 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TM9SF1O15321 606 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ARHGAP6O43182 974 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SCO2O43819 266 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 GMFGO60234 142 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MAGEC1O60732 1142 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MTX2O75431 263 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CDK14O94921 469 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TNFRSF6BO95407 300 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PTBP3O95758 552 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 APOC1P02654 83 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 NTRK1P04629 796 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 IGFBP1P08833 259 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 HBQ1P09105 142 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CNPP09543 421 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SPATA31D3P0C874 917 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF888P0CJ79 500 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DBTP11182 482 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CYP2B6P20813 491 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CTSSP25774 331 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 HTR7P34969 479 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ADMP35318 185 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 THPOP40225 353 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CDKN1BP46527 198 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RFX5P48382 616 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FNTBP49356 437 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 POU6F2P78424 691 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TEKQ02763 1124 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 GAD2Q05329 585 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PPP3CAQ08209 521 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 STK4Q13043 487 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DAG1Q14118 895 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CLCA4Q14CN2 919 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CTXN3Q4LDR2 81 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PAGE2BQ5JRK9 111 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms