RNA–Protein interactions for RNA: ENST00000454542.5

HDAC4-205, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-205ENST00000454542 MSH3P20585 1137 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 AKT1P31749 480 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 NPY2RP49146 381 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 CDKN1CP49918 316 aaPredicted RBP13.94□□□□□ -0.18
HDAC4-205ENST00000454542 SESN2P58004 480 aaPredicted RBP13.94□□□□□ -0.18
HDAC4-205ENST00000454542 UBE2IP63279 158 aaKnown RBP13.94□□□□□ -0.18
HDAC4-205ENST00000454542 KIR2DS5Q14953 304 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 DBN1Q16643 649 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 RNASEH2BQ5TBB1 312 aaKnown RBP13.94□□□□□ -0.18
HDAC4-205ENST00000454542 IYDQ6PHW0 289 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 ABRAXAS1Q6UWZ7 409 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 SERPINA9Q86WD7 417 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 MARCH9Q86YJ5 346 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 CCNJLQ8IV13 435 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 DEPDC7Q96QD5 511 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 COPS8Q99627 209 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 SYBUQ9NX95 663 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 LRIT1Q9P2V4 623 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 SOX13Q9UN79 622 aa13.94□□□□□ -0.18
HDAC4-205ENST00000454542 CHD8Q9HCK8 2581 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 FREM2Q5SZK8 3169 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 CCDC78A2IDD5 438 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 OR2AG2A6NM03 316 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 OR5K4A6NMS3 321 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 DNALI1O14645 258 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 PPM1DO15297 605 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 GOT2P00505 430 aaKnown RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 BRAFP15056 766 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 IVDP26440 423 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 MGAT1P26572 445 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 ARNTP27540 789 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 GPR3P46089 330 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 CRADDP78560 199 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 TARDBPQ13148 414 aaKnown RBP eCLIP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 CLPPQ16740 277 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 ZRANB3Q5FWF4 1079 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 TMEM220Q6QAJ8 160 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 UNQ6494/PRO21346Q6UXR6 183 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 RBM44Q6ZP01 1051 aaKnown RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 FAM83HQ6ZRV2 1179 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 SYDE1Q6ZW31 735 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 AVL9Q8NBF6 648 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 HDAC10Q969S8 669 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 TTC25Q96NG3 672 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 SERPINB12Q96P63 405 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 LRRN3Q9H3W5 708 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 FAM96AQ9H5X1 160 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 XAB2Q9HCS7 855 aaKnown RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 PRDM8Q9NQV8 689 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 BFARQ9NZS9 450 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 SCHIP1Q9P0W5 487 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-205ENST00000454542 DKK4Q9UBT3 224 aa13.93□□□□□ -0.18
HDAC4-205ENST00000454542 MGAT4DA6NG13 374 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 LILRA5A6NI73 299 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 CFAP99D6REC4 459 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 POP7O75817 140 aaKnown RBP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 AP2A2O94973 939 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 RPLP0P05388 317 aaKnown RBP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 RALBP11234 206 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 ATP1B2P14415 290 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 JUPP14923 745 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 VCLP18206 1134 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 CCL7P80098 99 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 SARNPP82979 210 aaKnown RBP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 SQSTM1Q13501 440 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 SPIDRQ14159 915 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 ISXQ2M1V0 245 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 FNBP1LQ5T0N5 605 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 ZNF572Q7Z3I7 529 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 HOOK3Q86VS8 718 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 AMZ2Q86W34 360 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 JAMLQ86YT9 394 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 PPIL6Q8IXY8 311 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 AGGF1Q8N302 714 aaeCLIP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 BEND7Q8N7W2 519 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-205ENST00000454542 OR2L2Q8NH16 312 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 HM13Q8TCT9 377 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 GRAMD1AQ96CP6 724 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 SGF29Q96ES7 293 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 OSGEPL1Q9H4B0 414 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 UCK1Q9HA47 277 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 CHRAC1Q9NRG0 131 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 DNAJC16Q9Y2G8 782 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 ENTPD2Q9Y5L3 495 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 ACACBO00763 2458 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 PIKFYVEQ9Y2I7 2098 aa13.92□□□□□ -0.18
HDAC4-205ENST00000454542 IGHV1OR21-1A0A087WYE8 117 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 C17orf113A0A1B0GUU1 675 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 TMEM8BA6NDV4 472 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 C1QTNF9BB2RNN3 333 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 CSO75390 466 aaKnown RBP13.91□□□□□ -0.18
HDAC4-205ENST00000454542 C1QTNF9P0C862 333 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 XRCC1P18887 633 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-205ENST00000454542 NMBRP28336 390 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 CCKBRP32239 447 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 NSG1P42857 185 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 PAFAH1B1P43034 410 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 HHEXQ03014 270 aa13.91□□□□□ -0.18
HDAC4-205ENST00000454542 DHX34Q14147 1143 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms