RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 SLC36A3Q495N2 470 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 ATP6AP1LQ52LC2 224 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 INTS11Q5TA45 600 aaKnown RBP13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 BBS5Q8N3I7 341 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 SFRP1Q8N474 314 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 TMEM199Q8N511 208 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 CLDN19Q8N6F1 224 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 PAF1Q8N7H5 531 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 CD200R1Q8TD46 325 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 FATE1Q969F0 183 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 WBP2Q969T9 261 aa13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 C12orf43Q96C57 262 aaKnown RBP13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 TDRD1Q9BXT4 1180 aaKnown RBP13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 COL4A4P53420 1690 aaPredicted RBP13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 FNDC1Q4ZHG4 1894 aaPredicted RBP13.4□□□□□ -0.26
HERPUD1-204ENST00000439977 ACSL4O60488 711 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 ALPIP09923 528 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 ATF6P18850 670 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 LPOP22079 712 aaPredicted RBP13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 EEF1B2P24534 225 aaKnown RBP13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 NFKBIAP25963 317 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 ENTPD1P49961 510 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 NR6A1Q15406 480 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 ATP6AP1Q15904 470 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 TRIM71Q2Q1W2 868 aaKnown RBP13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 RFTN2Q52LD8 501 aaPredicted RBP13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 GLYATQ6IB77 296 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 DHRSXQ8N5I4 330 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 OR56A4Q8NGH8 313 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 ISOC1Q96CN7 298 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 TRIM54Q9BYV2 358 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 POLR1BQ9H9Y6 1135 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 OLA1Q9NTK5 396 aaKnown RBP13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 PCDHB9Q9Y5E1 797 aa13.4□□□□□ -0.27
HERPUD1-204ENST00000439977 A0A087WXM4 84 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 TCRBV5S2A0A599 114 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ANKRD66B4E2M5 251 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 MYF6P23409 242 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ELK4P28324 431 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 RPS9P46781 194 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 EMP3P54852 163 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 TAF1AQ15573 450 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 CYBRD1Q53TN4 286 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ATXN7L2Q5T6C5 722 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ERI1Q8IV48 349 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 FAM86B1Q8N7N1 296 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 MFSD2AQ8NA29 543 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 HM13Q8TCT9 377 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 POPDC3Q9HBV1 291 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 TMCO1Q9UM00 188 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 PTPRDP23468 1912 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 FAM92AA1XBS5 289 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 MANSC4A6NHS7 340 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ATE1O95260 518 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 RASAL1O95294 804 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 LDLRP01130 860 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 RHOCP08134 193 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 CA5AP35218 305 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ATP5C1P36542 298 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ADARP55265 1226 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ERVK-8P63133 956 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 TRAF2Q12933 501 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 DCTN2Q13561 401 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 LAPTM5Q13571 262 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 PTGR1Q14914 329 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 RNF219Q5W0B1 726 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ANKRD34AQ69YU3 496 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 FRA10AC1Q70Z53 315 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 HS3ST5Q8IZT8 346 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 DRAXINQ8NBI3 349 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 SNRNP27Q8WVK2 155 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 APOL5Q9BWW9 433 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 TM6SF2Q9BZW4 377 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 ABCG8Q9H221 673 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 NSUN3Q9H649 340 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 CXorf21Q9HAI6 301 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 SMPD3Q9NY59 655 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 IL37Q9NZH6 218 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 LEF1Q9UJU2 399 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 POLR3HQ9Y535 204 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 DOCK4Q8N1I0 1966 aa13.39□□□□□ -0.27
HERPUD1-204ENST00000439977 TRPM7Q96QT4 1865 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 A0A0J9YVX5 310 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 PRR35P0CG20 571 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 TCF3P15923 654 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 TNK2Q07912 1038 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 ABRAXAS2Q15018 415 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 XKR7Q5GH72 579 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 TMTC4Q5T4D3 741 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 OGFOD2Q6N063 350 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 TMEM26Q6ZUK4 368 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 SPATA19Q7Z5L4 167 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FAM126BQ8IXS8 530 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 DTWD1Q8N5C7 304 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 NKAPQ8N5F7 415 aaKnown RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 OR10Q1Q8NGQ4 319 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FIG4Q92562 907 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 SGCDQ92629 289 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 UPF1Q92900 1129 aaKnown RBP eCLIP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 EID2BQ96D98 161 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms