RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 INPP5DQ92835 1189 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 TOE1Q96GM8 510 aaKnown RBP16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 TPSD1Q9BZJ3 242 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 CD320Q9NPF0 282 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 SPATS2LQ9NUQ6 558 aaKnown RBP16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 IQCF5A8MTL0 148 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 KPNA5O15131 536 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 SLC31A1O15431 190 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 VEGFDO43915 354 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 DNAJC6O75061 913 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 NDUFS2O75306 463 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 CDK14O94921 469 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TOP3BO95985 862 aaKnown RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 SOD1P00441 154 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 IGLV3-19P01714 112 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TEAD1P28347 426 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 CD6P30203 668 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 AKT2P31751 481 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 CXCL12P48061 93 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 GLRBP48167 497 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 CSRP3P50461 194 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 IL2P60568 153 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 B4GALNT1Q00973 533 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TMEM115Q12893 351 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 MTAPQ13126 283 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TTC19Q6DKK2 380 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 C16orf46Q6P387 395 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 PAQR3Q6TCH7 311 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TRIM74Q86UV6 250 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TRAPPC5Q8IUR0 188 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 PLD6Q8N2A8 252 aaKnown RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 ZBTB2Q8N680 514 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TP53I13Q8NBR0 393 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 PLA2G15Q8NCC3 412 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 CENPTQ96BT3 561 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 NXNL1Q96CM4 212 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 ZNF514Q96K75 400 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 SPACA7Q96KW9 195 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 LENG8Q96PV6 779 aaPredicted RBP16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 MYOCQ99972 504 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 OR2AG1Q9H205 316 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 TRIM39Q9HCM9 518 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 C2orf42Q9NWW7 574 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 EBF1Q9UH73 591 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 DHRS7Q9Y394 339 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 BPTFQ12830 3046 aa16.9■□□□□ 0.3
CCDC28B-202ENST00000421922 OR2AG2A6NM03 316 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 FPGTO14772 594 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 PLIN3O60664 434 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 FSBPO95073 299 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 RBP1P09455 135 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 DGKAP23743 735 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 GMPRP36959 345 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 ATP6V0D1P61421 351 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 CDK3Q00526 305 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 FGL2Q14314 439 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 INPP5AQ14642 412 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 SYTL3Q4VX76 610 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 ZNF648Q5T619 568 aaPredicted RBP16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 DOK6Q6PKX4 331 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 TRIM42Q8IWZ5 723 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 CENPLQ8N0S6 344 aaPredicted RBP16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 PELI3Q8N2H9 469 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 PPP1R14CQ8TAE6 165 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 CD200R1Q8TD46 325 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 DENND1AQ8TEH3 1009 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 SGF29Q96ES7 293 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 CCDC97Q96F63 343 aaPredicted RBP16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 LINGO1Q96FE5 620 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 C12orf65Q9H3J6 166 aaKnown RBP16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 ZNF358Q9NW07 568 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 TMEM216Q9P0N5 145 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 DOCK9Q9BZ29 2069 aa16.89■□□□□ 0.29
CCDC28B-202ENST00000421922 WDR91A4D1P6 747 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 CACNB4O00305 520 aaPredicted RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 DCXO43602 365 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 TAC1P20366 129 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 HNRNPA2B1P22626 353 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 SERPINB4P48594 390 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 CLCN7P51798 805 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 BOP1Q14137 746 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 ACAP2Q15057 778 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 KIAA0895LQ68EN5 471 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 CPNE9Q8IYJ1 553 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 MYO1HQ8N1T3 1032 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 SPATA6LQ8N4H0 392 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 RASGEF1AQ8N9B8 481 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 RDH11Q8TC12 318 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 LRRC8CQ8TDW0 803 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 NAT14Q8WUY8 206 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 SNX19Q92543 992 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 ELMO1Q92556 727 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 EDAQ92838 391 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 MRPL57Q9BQC6 102 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 UNKQ9C0B0 810 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 DERL2Q9GZP9 239 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 MRPL46Q9H2W6 279 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 FZD3Q9NPG1 666 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 MBNL1Q9NR56 388 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 IGSF5Q9NSI5 407 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms