RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 IKZF2Q9UKS7 526 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 IRAK3Q9Y616 596 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 ISM1B1AKI9 464 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 ZW10O43264 779 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 TOP3BO95985 862 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 PRDX6P30041 224 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 SWI5Q1ZZU3 235 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 SFT2D3Q587I9 215 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 LINGO2Q7L985 606 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 EXOSC8Q96B26 276 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 TEFMQ96QE5 360 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 TTYH3Q9C0H2 523 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 SDCBP2Q9H190 292 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 IRF2BPLQ9H1B7 796 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 RIC1Q4ADV7 1423 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 GSAPA4D1B5 854 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 LRRC14BA6NHZ5 514 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 SAGE2PA6NJ88 616 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 TMEM233B4DJY2 109 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 PLIN3O60664 434 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 GOT2P00505 430 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 UGT2B4P06133 528 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 SAGP10523 405 aaPredicted RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 MMP8P22894 467 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 VARSP26640 1264 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 TEX44Q53QW1 395 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 USP43Q70EL4 1123 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 FSTL5Q8N475 847 aaPredicted RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 PKP2Q99959 881 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 GATA5Q9BWX5 397 aaPredicted RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 PCDHB12Q9Y5F1 795 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 NOTOA8MTQ0 251 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 HOXA2O43364 376 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 PRKAR2AP13861 404 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 ELP6Q0PNE2 266 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 MERTKQ12866 999 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 CRTC2Q53ET0 693 aaPredicted RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 SH3D19Q5HYK7 790 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 ZDHHC21Q8IVQ6 265 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 RAVER1Q8IY67 606 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 ZNF615Q8N8J6 731 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 OR10Q1Q8NGQ4 319 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 PIWIL1Q96J94 861 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 ZFP3Q96NJ6 502 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 BARD1Q99728 777 aaKnown RBP11.94□□□□□ -0.5
UBR4-205ENST00000417040 GIT1Q9Y2X7 761 aa11.94□□□□□ -0.5
UBR4-205ENST00000417040 CXorf49A8MYA2 514 aaPredicted RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 NT5C1B-RDH14C9J2C7 533 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SEPT4O43236 478 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 CD36P16671 472 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 THOP1P52888 689 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 LIMK2P53671 638 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 C9orf57Q5W0N0 161 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 NAPRTQ6XQN6 538 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 PRDM16Q9HAZ2 1276 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SPON1Q9HCB6 807 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 PLK2Q9NYY3 685 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 PCDHGC3Q9UN70 934 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ASF1AQ9Y294 204 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ADAMTS3O15072 1205 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 UROSP10746 265 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ZNF24P17028 368 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ZNF132P52740 706 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 HSPB3Q12988 150 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 PPIL2Q13356 520 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SMCO1Q147U7 214 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 HECTD3Q5T447 861 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 OAFQ86UD1 273 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ZBTB2Q8N680 514 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 TMEM203Q969S6 136 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ARMC5Q96C12 935 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 FRMD6Q96NE9 622 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 RNF38Q9H0F5 515 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 BCAS3Q9H6U6 928 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 MAGEE1Q9HCI5 957 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 IFT80Q9P2H3 777 aaPredicted RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 MCIDASD6RGH6 385 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SAP18O00422 153 aaKnown RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 PLK4O00444 970 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SLC30A4O14863 429 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 NDUFV1P49821 464 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 RPL6Q02878 288 aaKnown RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 SYT16Q17RD7 645 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 ALKBH2Q6NS38 261 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SYCE2Q6PIF2 218 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 FADS2P1A8MWK0 482 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SCAMP1O15126 338 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 NKRFO15226 690 aaKnown RBP eCLIP11.93□□□□□ -0.5
UBR4-205ENST00000417040 XRCC1P18887 633 aaPredicted RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 PRKD1Q15139 912 aaPredicted RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 C9orf64Q5T6V5 341 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 LYPLAL1Q5VWZ2 237 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 PDE12Q6L8Q7 609 aaKnown RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 FRRS1Q6ZNA5 592 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 CLEC4CQ8WTT0 213 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SUCOQ9UBS9 1254 aaKnown RBP11.93□□□□□ -0.5
UBR4-205ENST00000417040 FCER2P06734 321 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 MNDAP41218 407 aa11.93□□□□□ -0.5
UBR4-205ENST00000417040 SMU1Q2TAY7 513 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms