RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RNF19AQ9NV58 838 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 DNAJB9Q9UBS3 223 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 NTSR2O95665 410 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 CYP11A1P05108 521 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MTHFD1P11586 935 aaKnown RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ANKRD22Q5VYY1 191 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 CFAP206Q8IYR0 622 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ADGRG2Q8IZP9 1017 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ASCC1Q8N9N2 400 aaKnown RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 BANPQ8N9N5 519 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF548Q8NEK5 533 aaPredicted RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PIWIL1Q96J94 861 aaKnown RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 AGAP2Q99490 1192 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MCMBPQ9BTE3 642 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MROH8Q9H579 483 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF780BQ9Y6R6 833 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 L7N2F9 121 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 NOMO1Q15155 1222 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TBRG1Q3YBR2 411 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SFT2D3Q587I9 215 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TOR1AIP1Q5JTV8 583 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MAFIPQ8WZ33 124 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 C12orf66Q96MD2 445 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PCDHB18PQ96TA0 734 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ATG10Q9H0Y0 220 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 INSRRP14616 1297 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 LPOP22079 712 aaPredicted RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 RPS3P23396 243 aaKnown RBP eCLIP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MC4RP32245 332 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PTGIRP43119 386 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MAGEA8P43361 318 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 DAG1Q14118 895 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SLC9B1Q4ZJI4 515 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 RTL4Q6ZR62 310 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 FAM83AQ86UY5 434 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 CRYBG2Q8N1P7 616 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 BARD1Q99728 777 aaKnown RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PKP2Q99959 881 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 LPIN3Q9BQK8 851 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SGK2Q9HBY8 427 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 EQTNQ9NQ60 294 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 GULP1Q9UBP9 304 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TET3O43151 1660 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SMCO3A2RU48 225 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 LINGO3P0C6S8 592 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TPSB2P20231 275 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 MTPNP58546 118 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 RPL26P61254 145 aaKnown RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TPSAB1Q15661 275 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TMEM161BQ8NDZ6 487 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 KPNA3O00505 521 aaPredicted RBP11.74□□□□□ -0.53
SYNPO-202ENST00000394243 OR7A10O76100 309 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 THOP1P52888 689 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 GRM3Q14832 879 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 LYPLAL1Q5VWZ2 237 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 AMIGO1Q86WK6 493 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 NT5DC4Q86YG4 428 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 OR10H4Q8NGA5 316 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 XAGE5Q8WWM1 108 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 BRD9Q9H8M2 597 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PCDH18Q9HCL0 1135 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SPG21Q9NZD8 308 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TCHHQ07283 1943 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 KCNQ2O43526 872 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 TPST2O60704 377 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 C8BP07358 591 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 IL1R1P14778 569 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 CAP2P40123 477 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 EIF5AP63241 154 aaKnown RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 SRSF11Q05519 484 aaKnown RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 NAE1Q13564 534 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 HGSNATQ68CP4 663 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF410Q86VK4 478 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 JAZF1Q86VZ6 243 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 STOML3Q8TAV4 291 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 TRPM4Q8TD43 1214 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 TRAPPC12Q8WVT3 735 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 KCTD7Q96MP8 289 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 GATA5Q9BWX5 397 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 GDAP2Q9NXN4 497 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 MARCH2Q9P0N8 246 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 SPIN1Q9Y657 262 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 KCNE2Q9Y6J6 123 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 A0A1W2PPW3 197 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 PLD2O14939 933 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 XPNPEP2O43895 674 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 FGBP02675 491 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 CYP3A5P20815 502 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 CYP2C18P33260 490 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 RBM34P42696 430 aaKnown RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 STXBP1P61764 594 aaKnown RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 MC1RQ01726 317 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 ALG11Q2TAA5 492 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 HSD17B12Q53GQ0 312 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 METTL7BQ6UX53 244 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 SLC26A9Q7LBE3 791 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 PLCZ1Q86YW0 608 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 GATAD2BQ8WXI9 593 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF214Q9UL59 606 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 MPP1Q00013 466 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms