RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 TBC1D3GQ6DHY5 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3CQ6IPX1 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TREML1Q86YW5 311 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3Q8IZP1 549 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 PARP8Q8N3A8 854 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TMCO5AQ8N6Q1 288 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 PROX1Q92786 737 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 EBF2Q9HAK2 575 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 FBRSL1Q9HCM7 1045 aaKnown RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 RAD18Q9NS91 495 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 KLHL28Q9NXS3 571 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 SAMHD1Q9Y3Z3 626 aaKnown RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 COPG1Q9Y678 874 aaKnown RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 BCL10O95999 233 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 CYP4B1P13584 511 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 PTPN2P17706 415 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 XRCC1P18887 633 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 IMPDH1P20839 514 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 ACTR3P61158 418 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TTC23Q5W5X9 447 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 Q6ZVU0 165 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 SPATA19Q7Z5L4 167 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 DDHD1Q8NEL9 900 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 STARD8Q92502 1023 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 APOL4Q9BPW4 351 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 HEPHQ9BQS7 1158 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 NLNQ9BYT8 704 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 INTS10Q9NVR2 710 aaKnown RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 C3orf18Q9UK00 162 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 LTBP4Q8N2S1 1624 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 BBIP1A8MTZ0 92 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 MAN1A2O60476 641 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 GDF5P43026 501 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 HERVK_113P63132 956 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ECT2LQ008S8 904 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 RTP2Q5QGT7 225 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 CILP2Q8IUL8 1156 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 OR2T34Q8NGX1 318 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 OR2T3Q8NH03 318 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 LRTOMTQ8WZ04 291 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 MTERF1Q99551 399 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ERVK-6Q9BXR3 956 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ALG2Q9H553 416 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 MOCS1Q9NZB8 636 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TUBGCP6Q96RT7 1819 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 COL4A1P02462 1669 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ATG13O75143 517 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ECI2O75521 394 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TRBC1P01850 177 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 SLC10A3P09131 477 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 NSG1P42857 185 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 LSM3P62310 102 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 SERINC3Q13530 473 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 DPYSQ14117 519 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 GSTA3Q16772 222 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 SPRED3Q2MJR0 410 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 FAM174BQ3ZCQ3 159 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ATAD3BQ5T9A4 648 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 REM2Q8IYK8 340 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 PAWRQ96IZ0 340 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 C1QTNF7Q9BXJ2 289 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 EBPLQ9BY08 206 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 SLC28A3Q9HAS3 691 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 NUDT4Q9NZJ9 180 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ENTPD4Q9Y227 616 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 HPGDP15428 266 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 RPL5P46777 297 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TRIM16LQ309B1 348 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TYW3Q6IPR3 259 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TMCO2Q7Z6W1 182 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 CBR4Q8N4T8 237 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TIFAQ96CG3 184 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 REXO5Q96IC2 774 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 MAGEB10Q96LZ2 347 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 AKTIPQ9H8T0 292 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 DUS2Q9NX74 493 aaKnown RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 CEP290O15078 2479 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ZNF487B1APH4 448 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 FGF3P11487 239 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 PSMD8P48556 350 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 MTPNP58546 118 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 RFTN1Q14699 578 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 CHRNA6Q15825 494 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 CAPN13Q6MZZ7 669 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TRNP1Q6NT89 227 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 PSRC1Q6PGN9 363 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-203ENST00000378169 SETD9Q8NE22 299 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 OR10A6Q8NH74 314 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 CYB5D2Q8WUJ1 264 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 EEF1AKMT1Q8WVE0 214 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 NELL1Q92832 810 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 UBE2E3Q969T4 207 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ITCHQ96J02 903 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 ARMC7Q9H6L4 198 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 TMEM248Q9NWD8 314 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 PPM1HQ9ULR3 514 aa13.05□□□□□ -0.32
NPHP4-203ENST00000378169 SCN9AQ15858 1988 aa13.04□□□□□ -0.32
NPHP4-203ENST00000378169 CCDC189A1A4V9 331 aa13.04□□□□□ -0.32
NPHP4-203ENST00000378169 INPPL1O15357 1258 aa13.04□□□□□ -0.32
NPHP4-203ENST00000378169 RNASEH2AO75792 299 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms