RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ZFYVE1Q9HBF4 777 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 IGSF5Q9NSI5 407 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 NFKBIL1Q9UBC1 381 aaPredicted RBP13.59□□□□□ -0.23
VPS29-201ENST00000360579 SLC23A2Q9UGH3 650 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 DNAJC16Q9Y2G8 782 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 IGHV5-51A0A0C4DH38 117 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 LRRC10BA6NIK2 292 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 OR52A4PA6NMU1 304 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 KCNJ13O60928 360 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 CLDN1O95832 211 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 LDLRP01130 860 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 JCHAINP01591 159 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 KLK3P07288 261 aaPredicted RBP13.58□□□□□ -0.24
VPS29-201ENST00000360579 BRAFP15056 766 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 FOLR1P15328 257 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 CDK11BP21127 795 aaKnown RBP13.58□□□□□ -0.24
VPS29-201ENST00000360579 RPL10P27635 214 aaKnown RBP13.58□□□□□ -0.24
VPS29-201ENST00000360579 IL10RAQ13651 578 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 LAMB3Q13751 1172 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 IHHQ14623 411 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 PLA2G4EQ3MJ16 856 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 FAM199XQ6PEV8 388 aaPredicted RBP13.58□□□□□ -0.24
VPS29-201ENST00000360579 OR8K5Q8NH50 307 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 MR1Q95460 341 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 TSGA13Q96PP4 275 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 RUFY1Q96T51 708 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 ARFGAP3Q9NP61 516 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 FGF21Q9NSA1 209 aa13.58□□□□□ -0.24
VPS29-201ENST00000360579 ANKRD17O75179 2603 aaKnown RBP13.58□□□□□ -0.24
VPS29-201ENST00000360579 ZNF106Q9H2Y7 1883 aaKnown RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 CACNA1DQ01668 2161 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 SHANK1Q9Y566 2161 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 HIVEP3Q5T1R4 2406 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 MFSD11O43934 449 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 SCRG1O75711 98 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 TMEM63AO94886 807 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 CDK14O94921 469 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 TCF4P15884 667 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 MX2P20592 715 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 FECHP22830 423 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 COL8A1P27658 744 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 PTGIRP43119 386 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 GSDMDP57764 484 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 TUBB4BP68371 445 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 HSD11B2P80365 405 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 NIPAL4Q0D2K0 466 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 TUBB2AQ13885 445 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 PAFAH1B3Q15102 231 aaKnown RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 PRR30Q53SZ7 412 aaPredicted RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 ZNF648Q5T619 568 aaPredicted RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 ALS2CLQ60I27 953 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 SLC6A19Q695T7 634 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 ZNF517Q6ZMY9 492 aaPredicted RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 TMEM126BQ8IUX1 230 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 TMEM102Q8N9M5 508 aaPredicted RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 Q8NA96 180 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 C5orf34Q96MH7 638 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 LRFN5Q96NI6 719 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 TUBB2BQ9BVA1 445 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 NUP85Q9BW27 656 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 HAUS4Q9H6D7 363 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 AKIRIN1Q9H9L7 192 aaPredicted RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 MYO1AQ9UBC5 1043 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 ERRFI1Q9UJM3 462 aaPredicted RBP13.57□□□□□ -0.24
VPS29-201ENST00000360579 SNX7Q9UNH6 387 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 SLC5A6Q9Y289 635 aa13.57□□□□□ -0.24
VPS29-201ENST00000360579 UBA6A0AVT1 1052 aaPredicted RBP13.56□□□□□ -0.24
VPS29-201ENST00000360579 TLCD2A6NGC4 264 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 HLA-DQB2P05538 268 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 RAB40ALP0C0E4 278 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 EBLN1P0CF75 366 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 IL4RP24394 825 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 TNFRSF8P28908 595 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 DRG2P55039 364 aaKnown RBP13.56□□□□□ -0.24
VPS29-201ENST00000360579 RRADP55042 308 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 MYL5Q02045 173 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 SLC25A11Q02978 314 aaKnown RBP13.56□□□□□ -0.24
VPS29-201ENST00000360579 GTF2H3Q13889 308 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 KCNAB1Q14722 419 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 ASIC2Q16515 512 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 ZRANB3Q5FWF4 1079 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 DNTTIP2Q5QJE6 756 aaKnown RBP13.56□□□□□ -0.24
VPS29-201ENST00000360579 CCDC183Q5T5S1 534 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 TXNRD3NBQ6F5E7 133 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 MED25Q71SY5 747 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 ZNF547Q8IVP9 402 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 IQCKQ8N0W5 287 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 SLC34A3Q8N130 599 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 CARFQ8N187 725 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 D2HGDHQ8N465 521 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 NIPA2Q8N8Q9 360 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 GPR26Q8NDV2 337 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 FDCSPQ8NFU4 85 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 ADAMTS17Q8TE56 1095 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 XPO4Q9C0E2 1151 aaKnown RBP13.56□□□□□ -0.24
VPS29-201ENST00000360579 KCND1Q9NSA2 647 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 GPR83Q9NYM4 423 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 TMEM63CQ9P1W3 806 aa13.56□□□□□ -0.24
VPS29-201ENST00000360579 LRRC53A6NM62 1247 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 ZBTB11O95625 1053 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms