RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CNDP2Q96KP4 475 aaKnown RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 C9orf72Q96LT7 481 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 EFHD1Q9BUP0 239 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 KIFC1Q9BW19 673 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 PDE7BQ9NP56 450 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 FZD3Q9NPG1 666 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 TXLNGQ9NUQ3 528 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 NDOR1Q9UHB4 597 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 HTRA2O43464 458 aaPredicted RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 POP7O75817 140 aaKnown RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 SNUPNO95149 360 aaKnown RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 NIPAL4Q0D2K0 466 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 SLC10A2Q12908 348 aaPredicted RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 NFATC2Q13469 925 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 ZC3H12BQ5HYM0 836 aaKnown RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 GPRC6AQ5T6X5 926 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 GALNT15Q8N3T1 639 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 CDKN2AIPNLQ96HQ2 116 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 MRGPRX3Q96LB0 322 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 VPS35Q96QK1 796 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 TRIB3Q96RU7 358 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 ROGDIQ9GZN7 287 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 TM9SF3Q9HD45 589 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 DNAAF2Q9NVR5 837 aaKnown RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 SPATA7Q9P0W8 599 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 CLEC4EQ9ULY5 219 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 TTC24A2A3L6 582 aaPredicted RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 HMGB1P1B2RPK0 211 aaPredicted RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 AVPR1BP47901 424 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 PRRT3Q5FWE3 981 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 PIP5KL1Q5T9C9 394 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 MDGA1Q8NFP4 955 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 TBATAQ96M53 351 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 PARD6BQ9BYG5 372 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 NUDT4Q9NZJ9 180 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 FBXO5Q9UKT4 447 aa9.08□□□□□ -0.96
UPF2-202ENST00000357604 PDCD11Q14690 1871 aaKnown RBP9.08□□□□□ -0.96
UPF2-202ENST00000357604 ESYT3A0FGR9 886 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 MGAT4DA6NG13 374 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 BTN3A1O00481 513 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 GABBR2O75899 941 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CHRM1P11229 460 aaPredicted RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 RAB10P61026 200 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 UNC5DQ6UXZ4 953 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 Q8N9G6 341 aaPredicted RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 PAFAH2Q99487 392 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 RIC8BQ9NVN3 520 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CDC14AQ9UNH5 594 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 AP2B1P63010 937 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 KLF1Q13351 362 aaPredicted RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 CSHL1Q14406 222 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 RAB6CQ53S08 254 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 AGBL4Q5VU57 503 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 Q6ZVL8 140 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 ANKS4BQ8N8V4 417 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 SIDT2Q8NBJ9 832 aaKnown RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 TSACCQ96A04 125 aaPredicted RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 RAB6CQ9H0N0 254 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 MTG2Q9H4K7 406 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 POPDC3Q9HBV1 291 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 MRGBPQ9NV56 204 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 GPC4O75487 556 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 RPS3P23396 243 aaKnown RBP eCLIP9.07□□□□□ -0.96
UPF2-202ENST00000357604 IRAK1P51617 712 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 GDF10P55107 478 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 DPTQ07507 201 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 SPEM2Q0P670 501 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 SMAD1Q15797 465 aaKnown RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 SNAP47Q5SQN1 464 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 MFSD4BQ5TF39 518 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 PMS2CLQ68D20 193 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 KDELC1Q6UW63 502 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 RASGRP3Q8IV61 690 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 FAM160A2Q8N612 972 aaPredicted RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 EID2Q8N6I1 236 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CCDC138Q96M89 665 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 EPHX3Q9H6B9 360 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 MED4Q9NPJ6 270 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 PIH1D1Q9NWS0 290 aaKnown RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 CCDC162PA2VCL2 907 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 IPO13O94829 963 aaKnown RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 ZWINTO95229 277 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CCNYL3P0C7X3 344 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 SERPINB1P30740 379 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CHRNA4P43681 627 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CCNG1P51959 295 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 DUPD1Q68J44 220 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 ZCCHC8Q6NZY4 707 aaKnown RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 TMEM92Q6UXU6 159 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 TMC3Q7Z5M5 1100 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 C17orf64Q86WR6 236 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 TTLQ8NG68 377 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 FAM129BQ96TA1 746 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 RHOJQ9H4E5 214 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 WDR41Q9HAD4 459 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 CCDC177Q9NQR7 707 aaPredicted RBP9.07□□□□□ -0.96
UPF2-202ENST00000357604 PCMTD2Q9NV79 361 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 NLGN3Q9NZ94 848 aa9.07□□□□□ -0.96
UPF2-202ENST00000357604 A0A1B0GVT2 93 aa9.06□□□□□ -0.96
UPF2-202ENST00000357604 NPIPB15A6NHN6 443 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms