RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 LMAN2Q12907 356 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 ZNF77Q15935 545 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 SAMD4BQ5PRF9 694 aaKnown RBP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 ACBD5Q5T8D3 534 aaPredicted RBP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 FAM45BPQ6NSW5 357 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 PPP4R4Q6NUP7 873 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 LARP4Q71RC2 724 aaKnown RBP eCLIP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 RETREG3Q86VR2 466 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 ADGRG2Q8IZP9 1017 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 FAM45AQ8TCE6 357 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 SMG7Q92540 1137 aaKnown RBP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 PBXIP1Q96AQ6 731 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 HSPBAP1Q96EW2 488 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 ASIC4Q96FT7 647 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 FAR2Q96K12 515 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 C3orf30Q96M34 536 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 MUC3BQ9H195 1237 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 CLK4Q9HAZ1 481 aaKnown RBP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 EML4Q9HC35 981 aaKnown RBP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 VPS51Q9UID3 782 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 FCF1Q9Y324 198 aaKnown RBP8.52□□□□□ -1.04
TRIM55-204ENST00000353317 TRAF6Q9Y4K3 522 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 WNT6Q9Y6F9 365 aa8.52□□□□□ -1.04
TRIM55-204ENST00000353317 CCL22O00626 93 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 INSIG1O15503 277 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 ZNF821O75541 412 aaPredicted RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 ANXA9O76027 345 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 LATS1O95835 1130 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 HNRNPA1P09651 372 aaKnown RBP eCLIP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 ALDOCP09972 364 aaKnown RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 BMP2P12643 396 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 UGT1A6P19224 532 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 KCNC1P48547 511 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 KPNA2P52292 529 aaKnown RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 OXCT1P55809 520 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 YBX1P67809 324 aaKnown RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 TUBA4AP68366 448 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 CTBSQ01459 385 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 DLX2Q07687 328 aaPredicted RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 TMED1Q13445 227 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 SEPT6Q14141 434 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 NEPROQ6NW34 567 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 DUS1LQ6P1R4 473 aaKnown RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 KLHL35Q6PF15 583 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 CPXM2Q8N436 756 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 ANKFN1Q8N957 763 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 HJURPQ8NCD3 748 aaPredicted RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 OR2T34Q8NGX1 318 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 OR2T3Q8NH03 318 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 ITFG2Q969R8 447 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 RPL10LQ96L21 214 aaKnown RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 PSKH2Q96QS6 385 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 MGME1Q9BQP7 344 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 EFHD1Q9BUP0 239 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 FSD1LQ9BXM9 530 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 GSTO2Q9H4Y5 243 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 SLC28A3Q9HAS3 691 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 MRGBPQ9NV56 204 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 ARMC1Q9NVT9 282 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 EBF1Q9UH73 591 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 MTF2Q9Y483 593 aaPredicted RBP8.52□□□□□ -1.05
TRIM55-204ENST00000353317 COL6A3P12111 3177 aa8.52□□□□□ -1.05
TRIM55-204ENST00000353317 LOC285095A0A1B0GVY8 99 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 FAM149AA5PLN7 773 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 SRP72O76094 671 aaKnown RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 LTA4HP09960 611 aaKnown RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 GKP32189 559 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 STK19P49842 368 aaPredicted RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 HYAL1Q12794 435 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 MTA1Q13330 715 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 GALNT3Q14435 633 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 TCEAL5Q5H9L2 206 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 SIRPB2Q5JXA9 342 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 ATXN7L2Q5T6C5 722 aaPredicted RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 AGAP9Q5VTM2 703 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 TMEM215Q68D42 235 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 ALG1LQ6GMV1 187 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 KIAA0930Q6ICG6 404 aaPredicted RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 SYCE2Q6PIF2 218 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 ERMP1Q7Z2K6 904 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 EPHX4Q8IUS5 362 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 CCDC117Q8IWD4 279 aaPredicted RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 CBR4Q8N4T8 237 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 OR6K2Q8NGY2 324 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 HM13Q8TCT9 377 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 PTCD2Q8WV60 388 aaKnown RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 ABTB1Q969K4 478 aaPredicted RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 CCDC126Q96EE4 140 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 ZFYVE19Q96K21 471 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 UBXN10Q96LJ8 280 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 MRM3Q9HC36 420 aaKnown RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 SMOXQ9NWM0 555 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 MAP10Q9P2G4 905 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 LHX3Q9UBR4 397 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 UBA2Q9UBT2 640 aaPredicted RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 SLC8A2Q9UPR5 921 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 MRPS23Q9Y3D9 190 aaKnown RBP8.51□□□□□ -1.05
TRIM55-204ENST00000353317 PCDHGC4Q9Y5F7 938 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 VCANP13611 3396 aa8.51□□□□□ -1.05
TRIM55-204ENST00000353317 SAC3D1A6NKF1 404 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms