RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TTC23LQ6PF05 361 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 SPESP1Q6UW49 350 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 METTL7BQ6UX53 244 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 DLEU7Q6UYE1 221 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CCDC81Q6ZN84 652 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 AGMOQ6ZNB7 445 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 GDPD3Q7L5L3 318 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CTU1Q7Z7A3 348 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 B3GNT8Q7Z7M8 397 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 UNC93AQ86WB7 457 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NLGN4XQ8N0W4 816 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 SVOPQ8N4V2 548 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 KIAA1958Q8N8K9 716 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 IL17RDQ8NFM7 739 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 OR6F1Q8NGZ6 308 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 MCFD2Q8NI22 146 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TSPEARQ8WU66 669 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ZNF566Q969W8 418 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 C18orf25Q96B23 403 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 PYCR2Q96C36 320 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 LGALS12Q96DT0 336 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 REXO5Q96IC2 774 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 HSFY1Q96LI6 401 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PPM1MQ96MI6 270 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 SLC2A13Q96QE2 648 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 GPR20Q99678 358 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ASPSCR1Q9BZE9 553 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 DKK3Q9UBP4 350 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 MAGEL2Q9UJ55 1249 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 LEF1Q9UJU2 399 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 CAB39Q9Y376 341 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 GPSM3Q9Y4H4 160 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 MIA3Q5JRA6 1907 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 LOC285556D6RIA3 1793 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 AGAP5A6NIR3 686 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CENPBD1B2RD01 187 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CLDN5O00501 218 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 KMOO15229 486 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SNX2O60749 519 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CCNKO75909 580 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 FADS2O95864 444 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 MT-ND2P03891 347 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 ANXA6P08133 673 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 GGT1P19440 569 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 GGT5P36269 586 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 HCAR3P49019 387 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 POLR2JP52435 117 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 SLC35A2P78381 396 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 TIAL1Q01085 375 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS39-202ENST00000348544 CHRNB3Q05901 458 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SCAPQ12770 1279 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 NPTX1Q15818 432 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 PFKFB4Q16877 469 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 ZNF181Q2M3W8 571 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 FAM98BQ52LJ0 330 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 INTS6LQ5JSJ4 861 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 ATAD3CQ5T2N8 411 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 KIAA0319Q5VV43 1072 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CES5AQ6NT32 575 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SCIMPQ6UWF3 145 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CCBE1Q6UXH8 406 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 RFPL4BQ6ZWI9 263 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CRYBG2Q8N1P7 616 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 NLGN1Q8N2Q7 840 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 METTL4Q8N3J2 472 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 BEND7Q8N7W2 519 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 OR2T11Q8NH01 316 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 FBXO30Q8TB52 745 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 NTAN1Q96AB6 310 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 ZBED3Q96IU2 234 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 EGLN2Q96KS0 407 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 GAD1Q99259 594 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 OR2B2Q9GZK3 357 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 DUSP21Q9H596 190 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 PRDM8Q9NQV8 689 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SMPD4Q9NXE4 827 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 DNAJB9Q9UBS3 223 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 AGO1Q9UL18 857 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 BOLA1Q9Y3E2 137 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 PLXNA1Q9UIW2 1896 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SOWAHBA6NEL2 793 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 METTL15A6NJ78 407 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SYCE1LA8MT33 242 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 HS6ST1O60243 411 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 MITFO75030 526 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 PMPCBO75439 489 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 SLC22A3O75751 556 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 C22orf31O95567 290 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 ANGPTL1O95841 491 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 PTTG1O95997 202 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CST1P01037 141 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 HOXD8P13378 290 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 BMP1P13497 986 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CD1DP15813 335 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 PFKLP17858 780 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 POLR2EP19388 210 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 PRDX3P30048 256 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 RYKP34925 604 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 TRPC1P48995 793 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 MRPL19P49406 292 aaKnown RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms