RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ZFP28Q8NHY6 868 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 APOLD1Q96LR9 279 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 DNAJC28Q9NX36 388 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 PTTG2Q9NZH5 202 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 STOX2Q9P2F5 926 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 PCYOX1Q9UHG3 505 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 ZNF639Q9UID6 485 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 MRPS23Q9Y3D9 190 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 TIMM22Q9Y584 194 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 ARPC4-TTLL3A0A0A6YYG9 625 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 HACD1B0YJ81 288 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SLC25A14O95258 325 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 UROSP10746 265 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 DGKEP52429 567 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SNRPD1P62314 119 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 HECTD3Q5T447 861 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 PSTKQ8IV42 348 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 ALG3Q92685 438 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 RBM4BQ9BQ04 359 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 AARSD1Q9BTE6 412 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 RBM4Q9BWF3 364 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 SAV1Q9H4B6 383 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 FBRSQ9HAH7 460 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SMPD3Q9NY59 655 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 ACTL7BQ9Y614 415 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 A0A1B0GV50 99 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 HCN1O60741 890 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 BMP7P18075 431 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 WASP42768 502 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 PLCZ1Q86YW0 608 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 ADCY4Q8NFM4 1077 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 MAFIPQ8WZ33 124 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 EFHD2Q96C19 240 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 NSMCE3Q96MG7 304 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 KXD1Q9BQD3 176 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 WRAP53Q9BUR4 548 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 ZNF700Q9H0M5 742 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 DDX4Q9NQI0 724 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 TULP4Q9NRJ4 1543 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 KCNA5P22460 613 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 RORCP51449 518 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 KIAA0319LQ8IZA0 1049 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 OR10H5Q8NGA6 315 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 HSPB11Q9Y547 144 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 PEX16Q9Y5Y5 336 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SLC30A4O14863 429 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 HDCP19113 662 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 FSHRP23945 695 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 ATP5C1P36542 298 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 ATXN1P54253 815 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 PRKCDQ05655 676 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 GLYATQ6IB77 296 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 GLIS2Q9BZE0 524 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 TMEM5Q9Y2B1 443 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SHANK1Q9Y566 2161 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 A0A0J9YYE9 177 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 MEN1O00255 615 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 ITGAVP06756 1048 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SMIM10L2AP0DMW4 78 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SMIM10L2BP0DMW5 78 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 RPS12P25398 132 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 IGFALSP35858 605 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SLC30A6Q6NXT4 461 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 TUBA3EQ6PEY2 450 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 UBE2R2Q712K3 238 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 OTOP3Q7RTS5 596 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 LENG9Q96B70 501 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 SGK2Q9HBY8 427 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 NR2F6P10588 404 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 GDI2P50395 445 aaKnown RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 BNIP3Q12983 259 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 USP30Q70CQ3 517 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 UFD1Q92890 307 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 UBE2E3Q969T4 207 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 CCNB1IP1Q9NPC3 277 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 NANSQ9NR45 359 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 PARPBPQ9NWS1 579 aa7.84□□□□□ -1.15
CIITA-201ENST00000324288 NKX1-2Q9UD57 310 aaPredicted RBP7.84□□□□□ -1.15
CIITA-201ENST00000324288 FADS2P1A8MWK0 482 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 RFXANKO14593 260 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 SHOX2O60902 331 aaPredicted RBP7.84□□□□□ -1.16
CIITA-201ENST00000324288 LGALS2P05162 132 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 RAB27AP51159 221 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 RAB10P61026 200 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 FIGNQ5HY92 759 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 CERCAMQ5T4B2 595 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 STARD8Q92502 1023 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 PAK6Q9NQU5 681 aaPredicted RBP7.84□□□□□ -1.16
CIITA-201ENST00000324288 EMC3Q9P0I2 261 aa7.84□□□□□ -1.16
CIITA-201ENST00000324288 TCRBV9S1A1TA0A576 114 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 APOC4-APOC2K7ER74 178 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 QSOX1O00391 747 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 FOXD2O60548 495 aaPredicted RBP7.83□□□□□ -1.16
CIITA-201ENST00000324288 PRAMEF1O95521 474 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 APOC2P02655 101 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 TUBA3CQ13748 450 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 CBX2Q14781 532 aaPredicted RBP7.83□□□□□ -1.16
CIITA-201ENST00000324288 PLEKHG6Q3KR16 790 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 CXCL17Q6UXB2 119 aa7.83□□□□□ -1.16
CIITA-201ENST00000324288 NAXEQ8NCW5 288 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms