RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZDHHC12Q96GR4 267 aa11.75□□□□□ -0.53
UPF3B-204ENST00000619445 TEKT5Q96M29 485 aa11.75□□□□□ -0.53
UPF3B-204ENST00000619445 FERMT1Q9BQL6 677 aa11.75□□□□□ -0.53
UPF3B-204ENST00000619445 LUC7LQ9NQ29 371 aaKnown RBP11.75□□□□□ -0.53
UPF3B-204ENST00000619445 TMEM9Q9P0T7 183 aa11.75□□□□□ -0.53
UPF3B-204ENST00000619445 FAM153AQ9UHL3 310 aa11.75□□□□□ -0.53
UPF3B-204ENST00000619445 SHOC2Q9UQ13 582 aa11.75□□□□□ -0.53
UPF3B-204ENST00000619445 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.75□□□□□ -0.53
UPF3B-204ENST00000619445 A8MU76 341 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 PDZK1P1A8MUH7 402 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 SUV39H1O43463 412 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 MFAP3LO75121 409 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 ZNF189O75820 626 aaPredicted RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 UBXN7O94888 489 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 C9P02748 559 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 LIFP15018 202 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 BPIP17213 487 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 AMD1P17707 334 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 ITGB6P18564 788 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 HALP42357 657 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 MAPK9P45984 424 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 HADHBP55084 474 aaKnown RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 PRKD1Q15139 912 aaPredicted RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 PCSK7Q16549 785 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 ALS2CLQ60I27 953 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 KDELC2Q7Z4H8 507 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 CPNE8Q86YQ8 564 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 VSTM4Q8IW00 320 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 HTR3CQ8WXA8 447 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 JPH3Q8WXH2 748 aaPredicted RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 P3H4Q92791 437 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 EID2BQ96D98 161 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 ZNF514Q96K75 400 aaPredicted RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 CALR3Q96L12 384 aaKnown RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 C9orf72Q96LT7 481 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 SPRY4Q9C004 299 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 RAB33BQ9H082 229 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 PRDM8Q9NQV8 689 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 DNMT3AQ9Y6K1 912 aaPredicted RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 UBR5O95071 2799 aaPredicted RBP11.74□□□□□ -0.53
UPF3B-204ENST00000619445 PTPN13Q12923 2485 aa11.74□□□□□ -0.53
UPF3B-204ENST00000619445 HACD1B0YJ81 288 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PMPCBO75439 489 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 STK17BO94768 372 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 SLC4A1P02730 911 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PYGMP11217 842 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 WT1P19544 449 aaPredicted RBP11.73□□□□□ -0.53
UPF3B-204ENST00000619445 HLA-DPA1P20036 260 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PTPN3P26045 913 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 KCNAB2Q13303 367 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 ITGA9Q13797 1035 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 SEPT6Q14141 434 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 TAZQ16635 292 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 TFDP3Q5H9I0 405 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 LDLRAP1Q5SW96 308 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 CRTC3Q6UUV7 619 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 GDAP1Q8TB36 358 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 LRRN4Q8WUT4 740 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PMEPA1Q969W9 287 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 RNF25Q96BH1 459 aaPredicted RBP11.73□□□□□ -0.53
UPF3B-204ENST00000619445 CXorf40BQ96DE9 158 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 TBC1D10AQ9BXI6 508 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 EPHA6Q9UF33 1036 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 IL17BQ9UHF5 180 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 TRHDEQ9UKU6 1024 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PKP3Q9Y446 797 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PCDHB3Q9Y5E6 796 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 PCYT1BQ9Y5K3 369 aaPredicted RBP11.73□□□□□ -0.53
UPF3B-204ENST00000619445 MAST4O15021 2626 aa11.73□□□□□ -0.53
UPF3B-204ENST00000619445 NBASA2RRP1 2371 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 RP1L1Q8IWN7 2480 aaPredicted RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 LOC285095A0A1B0GVY8 99 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 PRR19A6NJB7 356 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 TERTO14746 1132 aaKnown RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 CST8O60676 142 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 ZRANB2O95218 330 aaKnown RBP eCLIP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 MT-CYBP00156 380 aaPredicted RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 MT-ND3P03897 115 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 PIRTP0C851 137 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 COMTP21964 271 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SPAM1P38567 509 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SLC19A1P41440 591 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 CDKN2BP42772 138 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 CAPZBP47756 277 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 POLE2P56282 527 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 DYNLT1P63172 113 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 CYP4F2P78329 520 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 DMPKQ09013 629 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 TMEM115Q12893 351 aaPredicted RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 MPP3Q13368 585 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 MFSD7Q6UXD7 560 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 PRSS42Q7Z5A4 293 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 AMZ2Q86W34 360 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 BPHLQ86WA6 291 aaPredicted RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 TRAPPC5Q8IUR0 188 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 RCOR2Q8IZ40 523 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 BEND7Q8N7W2 519 aaPredicted RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SPATA22Q8NHS9 363 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 APOBEC4Q8WW27 367 aaKnown RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SEC14L1Q92503 715 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms