RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NFATC3Q12968 1075 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 NHSL2Q5HYW2 709 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 GLB1LQ6UWU2 654 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 PAQR9Q6ZVX9 377 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 PIWIL3Q7Z3Z3 882 aaKnown RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 SLC16A10Q8TF71 515 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 SLCO4A1Q96BD0 722 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 KATNAL1Q9BW62 490 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 LRRC3Q9BY71 257 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 ATP13A1Q9HD20 1204 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 PCDHGC4Q9Y5F7 938 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 GMPPBQ9Y5P6 360 aa12.49□□□□□ -0.41
LIG1-221ENST00000613670 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.49□□□□□ -0.41
LIG1-221ENST00000613670 ANGPTL1O95841 491 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 HAPLN1P10915 354 aaPredicted RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 UMPSP11172 480 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 FMO3P31513 532 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 DMPKQ09013 629 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TRIP4Q15650 581 aaPredicted RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 PAGE3Q5JUK9 113 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 NOL9Q5SY16 702 aaKnown RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 DUS1LQ6P1R4 473 aaKnown RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 SNX29P2Q8IUI4 249 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 GPC2Q8N158 579 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 OR52E6Q96RD3 313 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TMEM209Q96SK2 561 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 SH3GL1Q99961 368 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TUBA8Q9NY65 449 aaPredicted RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 CRLS1Q9UJA2 301 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 VPS9D1Q9Y2B5 631 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 HS3ST4Q9Y661 456 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 XPNPEP2O43895 674 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 CNOT3O75175 753 aaKnown RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 RASAL1O95294 804 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 HOXB8P17481 243 aaPredicted RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 FUT4P22083 530 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 MC4RP32245 332 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 GRK4P32298 578 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 CYP4F2P78329 520 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 CYP4F3Q08477 520 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 OR4D1Q15615 310 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 FAM174BQ3ZCQ3 159 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TRIM60Q495X7 471 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 PDCD4Q53EL6 469 aaKnown RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 LARP4Q71RC2 724 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIG1-221ENST00000613670 C16orf59Q7L2K0 433 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 GPR142Q7Z601 462 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 ADGRG5Q8IZF4 528 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 ATAD1Q8NBU5 361 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 LEMD2Q8NC56 503 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 UTP15Q8TED0 518 aaKnown RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 PPP1R14BQ96C90 147 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TSSK3Q96PN8 268 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 REXO4Q9GZR2 422 aaKnown RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 FUOMA2VDF0 154 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TRIM24O15164 1050 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 CLPXO76031 633 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 S1PR4O95977 384 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 FGF1P05230 155 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 GPX3P22352 226 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 S100A3P33764 101 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 ALDH3B2P48448 385 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 HSPA7P48741 367 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TPTEP56180 551 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 RELAQ04206 551 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 TAPT1Q6NXT6 567 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 ZNF773Q6PK81 442 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 IFNLR1Q8IU57 520 aaPredicted RBP12.48□□□□□ -0.41
LIG1-221ENST00000613670 FUNDC1Q8IVP5 155 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 HS3ST5Q8IZT8 346 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 OR7D4Q8NG98 312 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 MCOLN3Q8TDD5 553 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 ZHX1-C8orf76Q96EF9 292 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 MYRFLQ96LU7 910 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 ADAM2Q99965 735 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 AMBNQ9NP70 447 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 POLE4Q9NR33 117 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 USE1Q9NZ43 259 aa12.48□□□□□ -0.41
LIG1-221ENST00000613670 UBFD1O14562 309 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 PRKD3O94806 890 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 MFN2O95140 757 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 KRT75O95678 551 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 UROSP10746 265 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 PKMP14618 531 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 LEPRP48357 1165 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 IDH2P48735 452 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 HMGCS1Q01581 520 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 TRIM32Q13049 653 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 CTXN3Q4LDR2 81 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 INTS11Q5TA45 600 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 KIAA1841Q6NSI8 718 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 RANBP10Q6VN20 620 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ZNF621Q6ZSS3 439 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 DET1Q7L5Y6 550 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ZMIZ2Q8NF64 920 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 C11orf84Q9BUA3 381 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 NDEL1Q9GZM8 345 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ARMC1Q9NVT9 282 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 GMIPQ9P107 970 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ARL5CA6NH57 179 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms