RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 UBE2IP63279 158 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 KCNAB2Q13303 367 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 GTF2H3Q13889 308 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 TMEM26Q6ZUK4 368 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 TRAPPC5Q8IUR0 188 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 CXorf40BQ96DE9 158 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 ZNF71Q9NQZ8 489 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 FBXO8Q9NRD0 319 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 ZNF624Q9P2J8 865 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 TLN1Q9Y490 2541 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 SSU72P8A0A1W2PR75 194 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 OR52A4PA6NMU1 304 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 CAPN5O15484 640 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 BUD23O43709 281 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 UBXN7O94888 489 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 COMTP21964 271 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 PTPN3P26045 913 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 TNNT3P45378 269 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 CSRP3P50461 194 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 SH3BP2P78314 561 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 TRIM14Q14142 442 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 SKIDA1Q1XH10 827 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 KHDC1Q4VXA5 237 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 TEX44Q53QW1 395 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 ATP1A1-AS1Q5TC04 95 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 FAM92BQ6ZTR7 304 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 RASGRP3Q8IV61 690 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 RHOT2Q8IXI1 618 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 RHOT1Q8IXI2 618 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 AVL9Q8NBF6 648 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 HAUS1Q96CS2 278 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 C9orf72Q96LT7 481 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 TTC25Q96NG3 672 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 OLFM3Q96PB7 478 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 ZPBPQ9BS86 351 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 ABHD10Q9NUJ1 306 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 DDX56Q9NY93 547 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 OGFRQ9NZT2 677 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 ADGRG1Q9Y653 693 aa17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 MRPS18BQ9Y676 258 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-223ENST00000600552 BOD1L1Q8NFC6 3051 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 LILRA5A6NI73 299 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 ARHGAP6O43182 974 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 KIF1CO43896 1103 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 CST8O60676 142 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 KATNA1O75449 491 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 PECAM1P16284 738 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 XRCC1P18887 633 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 NFKB1P19838 968 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 IDSP22304 550 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 PBLDP30039 288 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 DCDC1P59894 354 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 ATP13A5Q4VNC0 1218 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 COLEC12Q5KU26 742 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 IRGCQ6NXR0 463 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 ZC3H18Q86VM9 953 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 RNF214Q8ND24 703 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 TFB1MQ8WVM0 346 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 SLC45A3Q96JT2 553 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 OR6C1Q96RD1 312 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 ULBP3Q9BZM4 244 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 EPB41L1Q9H4G0 881 aa17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 KLHL8Q9P2G9 620 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-223ENST00000600552 TERTO14746 1132 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 CHUKO15111 745 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A9O60656 530 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 ZNF28P17035 718 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A6P19224 532 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TCN2P20062 427 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A1P22309 533 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A4P22310 534 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 OAS2P29728 719 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 CHRNA4P43681 627 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 CLCNKAP51800 687 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 WNT3AP56704 352 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TLE1Q04724 770 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 CDC20Q12834 499 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TMEM115Q12893 351 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 CACHD1Q5VU97 1274 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 PDPK2PQ6A1A2 396 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 FAM151BQ6UXP7 276 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 CCDC50Q8IVM0 306 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 ZNF547Q8IVP9 402 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TTC30BQ8N4P2 665 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 GALNT6Q8NCL4 622 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 BLOC1S5Q8TDH9 187 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 STARD8Q92502 1023 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 RSC1A1Q92681 617 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TEKT5Q96M29 485 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TIMM29Q9BSF4 260 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 EFHD1Q9BUP0 239 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 SPRY4Q9C004 299 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 ADNPQ9H2P0 1102 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 GOLPH3Q9H4A6 298 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A7Q9HAW7 530 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A10Q9HAW8 530 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 UGT1A8Q9HAW9 530 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 FAM153AQ9UHL3 310 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 TMPRSS11EQ9UL52 423 aa17.29■□□□□ 0.36
SHKBP1-223ENST00000600552 PSMD13Q9UNM6 376 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms